Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 354 8e-93
>seq2332
Length=8947
Score = 354 bits (392), Expect = 8e-93
Identities = 654/955 (68%), Gaps = 37/955 (4%)
Strand=Plus/Minus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|||| ||||| || |||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 1334 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 1275
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681
|| | | ||| ||||||||||||||||||||||||||| | |||| | | ||||| |
Sbjct 1274 CCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT-TGAACATTATAGACTTTCTT 1216
Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741
| ||| | | | | || ||||||||| |||| ||| |||| ||||||| |||| || |
Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156
Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801
|| |||||||||| || | || || | | || || ||| |||| ||||| |||
Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096
Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861
|| || || ||||| || | ||| || | || || |||| |||
Sbjct 1095 AACTGCTTCAACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGC 1036
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| |||||
Sbjct 1035 AAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGA 976
Query 13922 AAATGTTAATCCTGGCAT------------------------CAATCCTCGtttttttAA 13957
||| ||||| |||||||| ||| |||| ||| |||||
Sbjct 975 AAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAA 916
Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017
||| || || | |||||||| || |||||| || || ||||| |||||||| || |
Sbjct 915 CCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAAC 856
Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14077
||||| ||| || | | | | | | | |||||| || ||||| |||| |||
Sbjct 855 TAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTT 796
Query 14078 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC--CTTCTCTTTAG-T 14134
| || ||||| | || |||||||||||||||||| || || |||| |||| | |
Sbjct 795 TCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTGGAT 737
Query 14135 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14194
||| ||| || |||||||| | | | ||| |||| || || || ||||| ||
Sbjct 736 CCTT--AATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCAT 679
Query 14195 TATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTC 14254
|| || ||||||||||| || ||||||| | ||| ||||| | |||| ||||
Sbjct 678 AATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTC 619
Query 14255 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14314
|||||||||||||| ||||||||| || ||||| ||||| |||| |||
Sbjct 618 AATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAAT 559
Query 14315 AAAGTATTGCTCTTCATTGTTGAGTTT---TTTCCAATCGGATAAATCCTTAGAAAGATC 14371
|||||| || |||| || | ||| | ||||||| |||||| ||| | |||
Sbjct 558 GAAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATC 499
Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTT 14431
| ||| ||| | |||||||| || | ||||| || || | | ||| ||||| |
Sbjct 498 AATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATG 439
Query 14432 ATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTTAAGAATTGGTTC 14485
|||| || ||||| | |||||||| ||| ||| || ||| ||| | ||||||
Sbjct 438 ATATCTAATTGGAAACATAACAAATCTACGAGGATTTTCCTTCAAG-AGTGGTTC 385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479712828602000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |