Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2332 354 8e-93 >seq2332 Length=8947 Score = 354 bits (392), Expect = 8e-93 Identities = 654/955 (68%), Gaps = 37/955 (4%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 |||| ||||| || |||||||| ||| |||||| |||||||| |||||||||||| Sbjct 1334 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 1275 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || | | ||| ||||||||||||||||||||||||||| | |||| | | ||||| | Sbjct 1274 CCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT-TGAACATTATAGACTTTCTT 1216 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 | ||| | | | | || ||||||||| |||| ||| |||| ||||||| |||| || | Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 || |||||||||| || | || || | | || || ||| |||| ||||| ||| Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 || || || ||||| || | ||| || | || || |||| ||| Sbjct 1095 AACTGCTTCAACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGC 1036 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| ||||| Sbjct 1035 AAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGA 976 Query 13922 AAATGTTAATCCTGGCAT------------------------CAATCCTCGtttttttAA 13957 ||| ||||| |||||||| ||| |||| ||| ||||| Sbjct 975 AAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAA 916 Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||| || || | |||||||| || |||||| || || ||||| |||||||| || | Sbjct 915 CCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAAC 856 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14077 ||||| ||| || | | | | | | | |||||| || ||||| |||| ||| Sbjct 855 TAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTT 796 Query 14078 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC--CTTCTCTTTAG-T 14134 | || ||||| | || |||||||||||||||||| || || |||| |||| | | Sbjct 795 TCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTGGAT 737 Query 14135 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGC 14194 ||| ||| || |||||||| | | | ||| |||| || || || ||||| || Sbjct 736 CCTT--AATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCAT 679 Query 14195 TATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTC 14254 || || ||||||||||| || ||||||| | ||| ||||| | |||| |||| Sbjct 678 AATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTC 619 Query 14255 GGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAAT 14314 |||||||||||||| ||||||||| || ||||| ||||| |||| ||| Sbjct 618 AATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAAT 559 Query 14315 AAAGTATTGCTCTTCATTGTTGAGTTT---TTTCCAATCGGATAAATCCTTAGAAAGATC 14371 |||||| || |||| || | ||| | ||||||| |||||| ||| | ||| Sbjct 558 GAAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATC 499 Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTT 14431 | ||| ||| | |||||||| || | ||||| || || | | ||| ||||| | Sbjct 498 AATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATG 439 Query 14432 ATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTTAAGAATTGGTTC 14485 |||| || ||||| | |||||||| ||| ||| || ||| ||| | |||||| Sbjct 438 ATATCTAATTGGAAACATAACAAATCTACGAGGATTTTCCTTCAAG-AGTGGTTC 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479712828602000