Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2332 331 9e-86 >seq2332 Length=8947 Score = 331 bits (366), Expect = 9e-86 Identities = 646/950 (68%), Gaps = 42/950 (4%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 |||| ||||| || |||||||| ||| |||||| ||||||||||||||||||||| Sbjct 1334 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 1275 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || | | ||| ||||||||||||||||| ||||||||| | |||| | | ||||| | Sbjct 1274 CCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT-TGAACATTATAGACTTTCTT 1216 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 | ||| | | | | |||||||||||| |||| ||| |||| ||||||| |||| || | Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 || |||||||||| || | || || | | || ||| ||| |||| ||||| ||| Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096 Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 || || || | ||||||||| | ||| || | || || |||| ||| Sbjct 1095 AACTGCTTC---AACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATG 1039 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 ||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| || Sbjct 1038 AGCAAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATT 979 Query 13707 TGAAAATGTTAATCCTG------------------------GCATCAATCCTCGtttttt 13742 |||||| ||||| |||| ||||||| |||| ||| || Sbjct 978 TGAAAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTT 919 Query 13743 tAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 |||||| || || | || |||||||| |||||| || || ||||| |||||||| || Sbjct 918 TAACCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGC 859 Query 13803 TATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | || || ||| || | | | | | | | |||||| || ||||| |||| Sbjct 858 AACTAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGC 799 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC--CTTCTCTTTA 13920 |||| || ||||| | || ||| || ||||| ||||| | || |||| |||| Sbjct 798 TTTTCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTG 740 Query 13921 G-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 | | ||| ||| || |||||||| | | | ||| |||| || || || ||||| || Sbjct 739 GATCCTT--AATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAAT 682 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCT 14039 || || ||||||||||| || ||||||| | ||| || || | |||| | Sbjct 681 CATAATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATT 622 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099 ||| || ||||||||||||||||||||| || ||||| ||||| |||| Sbjct 621 TTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGA 562 Query 14100 AATAAAGTATTGCTCTTCATTGTTGAGTTT---TTTCCAATCGGCTAAATCCTTAGAAAG 14156 ||| |||||| || |||| || | ||| | ||||||| |||||| ||| | Sbjct 561 AATGAAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAA 502 Query 14157 ATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216 ||| | ||| ||| | |||||||| || | ||||| || || | | ||| ||||| Sbjct 501 ATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTC 442 Query 14217 TTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGA 14265 | |||| || ||||| | |||||||| || ||| || ||| |||| Sbjct 441 ATGATATCTAATTGGAAACATAACAAATCTACGAGGATTTTCCTTCAAGA 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573664629200