Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq918 495 5e-135 seq2332 307 1e-78 >seq918 Length=18345 Score = 495 bits (548), Expect = 5e-135 Identities = 1487/2269 (66%), Gaps = 44/2269 (2%) Strand=Plus/Plus Query 70797 CAAT-GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTT 70855 |||| ||||| ||||| | || || || |||| || | || ||||||||| || || | Sbjct 8845 CAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAGTACATCCCGGTCT 8904 Query 70856 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCG 70914 | | || |||| ||||| ||||||||||| || | ||| || | | ||||| Sbjct 8905 TCAATCCCTTTTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTT-GGATCT 8963 Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974 || || ||||| | || ||| |||||| || || || | || || || ||||| Sbjct 8964 TTAATATGGATATTTAAAGATTGAGATTGATCAATAAATGCCGCTCTATCAGCTGCCATA 9023 Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 71034 | ||||| ||||| | ||||||||| | || ||||| | ||||| || || Sbjct 9024 TCAATGATATGTTTTTGAGAAATTTCCCATACTGTCTTATACAAGGCTTTAATCTCAGCT 9083 Query 71035 GGAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCT 71091 || | ||| | || ||||| || ||| || || |||||| ||| |||| | || Sbjct 9084 GGGATGTTAGGTAAGGATTGAATAGAACCATTATTTGAAATAATACTACTTTTAACTGCT 9143 Query 71092 TCATTCCATAATTTTCTC-TCGGTTAAAACTCT-AAGGAGATGAGGATTAACTACTTGAA 71149 |||||||| ||| | || ||| |||| || ||| |||||||| | ||| | Sbjct 9144 TCATTCCA-AATACCCAAATCAACCAAATCTCTTAATAAGAAT-GGATTAACAATTTGGA 9201 Query 71150 ATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCAT 71209 |||| |||| | ||||| | | ||||| || ||||| ||||| | | |||| Sbjct 9202 ATTCACCAGCAAGAACTCTTCTTGAATAAATGTTTGAAGTATATGGTTCGAAACATTCAT 9261 Query 71210 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTC 71269 |||| || || ||||| | ||||| ||||| |||||||| || || || ||| ||||| Sbjct 9262 TATTACCTAAGATTTGTGATGTTGAAGCAGTTGGCATAGGGGCAACTAAAAGAGAATTTC 9321 Query 71270 TAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTA 71329 | | |||||| | || || | |||| | ||||||| ||| | || | |||| Sbjct 9322 TTAATCCATGTTTTGCCATGTTTTGCTTTAAGGTATCCCAATCCCATAATTCAGTTGGTT 9381 Query 71330 CAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTAT 71389 | || | | || ||| |||| ||| | | Sbjct 9382 TTCTATTCCATAAATCATATTGTAATAAACCCTGAGATGCAGGTGAACCTGGATAAGATT 9441 Query 71390 CGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGG 71449 | || || ||||||| || ||||| |||| | | || | || ||| |||||| | Sbjct 9442 CATAAGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCCACGGCAGCATGATAAATAG 9501 Query 71450 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT-TTAAG 71508 |||| || || | |||| | ||| ||||| | ||||||||| |||| |||| Sbjct 9502 TTTCAAAGATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTTAAT 9560 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 || || || || || || ||||| || || | | || ||||| | | || | || Sbjct 9561 GCCATGAATGCATCAGCCAAACCTTGTACCCCCAAGGCAATTGGTCTATTTTTCATGTTG 9620 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 ||| ||| |||||||||| |||||||| ||| ||| |||| |||||| | ||| | | Sbjct 9621 GAAGTTTTGGCTTCTGGAACTGGATAATAGTTACGATCAATAACTTTATTTAAATTAC-G 9679 Query 71629 ACTATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAAATC--------TCC-CATC 71678 | || | | ||| | || | || ||| ||||| | | | || |||| Sbjct 9680 AGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCATCATC 9739 Query 71679 TATTACAA-ACACGTTC--AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 | || ||| | | | | ||||||| || || | |||||||| || || || | || Sbjct 9740 TTTTTCAACAAATGATGGTAAGGCAATTGAAGCTAAGTTACAAACAGCAACTTCTTCAGG 9799 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | ||||| | ||||||| || | ||| | || || | |||||||| | Sbjct 9800 TGATGAATATTCAACAATTTCACAACATAAATTGGATGATTTAATAATACCTAAATTCTT 9859 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 |||||| |||||| |||||| ||||| ||||| | ||||| ||||||||||||||| | Sbjct 9860 TTGATTGGTCTTTTGGTTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGT 9919 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAT-TCTTGTATCTCT 71914 || | ||| | || | | ||| | | | ||||| || | | ||| | | Sbjct 9920 TTGGGCTTCCAAGATGGAATACCATAATTTTTGTGCCTTAATGGTTTGTCTACCACGACC 9979 Query 71915 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 || | | ||| |||| | ||||||| |||| || || || || || ||| ||| | Sbjct 9980 TT-CACGTTCATATTTTTCATATAATTGTTCAAATTCATCACCATAAACATCAGGTAACC 10038 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 ||||| |||||| || | | |||| ||| || |||| | | |||| ||||||| Sbjct 10039 CAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACTCTCTTCATAA 10098 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 | | |||||||||||| | ||| |||| |||||||| |||| || || || ||| Sbjct 10099 ATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTT 10158 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 ||| ||| ||| ||| | || | | |||||| |||||||| ||||| || || | || Sbjct 10159 GATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAAAGGG 10218 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | |||| || | || || || || ||||| | || | ||||||||||| ||| Sbjct 10219 CAAATGCTCCTGGTCTCTTATTACCACCTTGATCAACATAACGGGCGGTGTTATTGAAAA 10278 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | | | ||| || |||||||| ||||| | ||| ||||| |||| ||||| ||| Sbjct 10279 CACGTACCATGGGGATAATACCGTTGGAAGTACCGTTGGTACCGGCAATATATGCCCCAG 10338 Query 72275 TGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 | | ||||||||| ||| || ||| || || || || | || || || || || | Sbjct 10339 TAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAAAGCAC 10398 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 | ||| || ||||||||||| || || || |||||| |||| || || |||| Sbjct 10399 AAGTTTTCAAAGTATCATAGATCCCATCAATTGAATCATCTTTCATAGCAACTAAGAAAC 10458 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | ||||||||| ||| ||| || ||||||||||| || || ||| | || || | Sbjct 10459 ATGAAGACATTTGTGGACTTGGAGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGA 10518 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT--GATG 72512 | | |||| |||| | ||| || | |||||| || |||| |||| ||| Sbjct 10519 AAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGGATAT--CATTACCATG 10576 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 || || | || || | ||| | | ||| || ||||||||| | | || ||| | Sbjct 10577 AATACCAATGGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATTAAC 10636 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 72630 | | || || || ||| |||||||||| || || || ||||| || || ||||| || Sbjct 10637 TCTTAATAAATAAGATCTTTCCAAAGTCTTGAACCCGAAATAATTATAGTTGAAA--TCA 10694 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 72690 || || |||| ||| | ||||| | || ||| || || || |||| ||| Sbjct 10695 CGATCATAAACAATTGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT-CATAAGT 10753 Query 72691 ATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 72749 | ||| ||||| || ||||||||||| | | || || |||||||| | |||| || Sbjct 10754 CTCCTTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCATATAATTC 10813 Query 72750 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 72809 | | |||| | | || |||| | |||| || |||| ||| |||||||| ||||| Sbjct 10814 TTTACTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTGGATACGGCAATTCT 10873 Query 72810 GGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTG 72868 || |||| |||||||||||||||||| || || || || ||| || |||| || | Sbjct 10874 AGCAGCTAAAATGGCATAATCTGGATGAATAGTGGT-CATGTAGGCAGCAGTTTCAGCGG 10932 Query 72869 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT-- 72926 | | | || ||||| || || || || |||| ||| | |||| || | ||| | Sbjct 10933 CTAAGTTATCTAATTCGACGGTGGTAACACCATGATAAACTCCT--GAAATGGTTCTTTG 10990 Query 72927 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 72986 || || | | ||| | ||||| | | ||| || ||||||||| || || | Sbjct 10991 AGTGATGGCGACGGCATCAACATGATTCGGATCTAATCCGTAACATAATCTTTGAACTCT 11050 Query 72987 AGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTA 73035 || ||||||||||| || |||| |||| | |||| || |||| Sbjct 11051 AGCGGTGATTTTATCGAAACGGACATGTTCCTTACGGCCATCTCTTTTA 11099 >seq2332 Length=8947 Score = 307 bits (340), Expect = 1e-78 Identities = 633/939 (67%), Gaps = 40/939 (4%) Strand=Plus/Minus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||||| || ||| || | ||||| ||||| ||||| || Sbjct 1335 TTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTT 1276 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 || | ||||| ||||||||||| |||||||| ||||| ||||||||| | ||| || Sbjct 1275 ACCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCTT 1216 Query 41875 AAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTC 41934 | || ||| || | |||||||| || | ||||| | |||| ||||| || Sbjct 1215 ATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTT 1156 Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 || ||||| |||| | ||||||| | || |||| | | |||| | ||||||| Sbjct 1155 ACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATC 1096 Query 41995 GACCGCGTCTGTTATAATAGATCTT----ACTGTTTCTTCACTCGGTGGATACAATAAAT 42050 || || || | |||| ||||| || ||||| | ||| || ||||| Sbjct 1095 AACTGCTTCA---ACAATA-ATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAAT 1040 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 | ||| | ||||| || ||||| || | ||| |||||||||| ||||||||| | Sbjct 1039 GAGCAAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCAT 980 Query 42111 TGGAAAACGTGAGTCCGGGCATTAG-----------------GC--CA---CGCTTTT-- 42146 | ||||| || | || ||||| || || | ||||| Sbjct 979 TTGAAAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCT 920 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || ||||| |||||||||||| |||||| || ||||| || || ||||||| Sbjct 919 TTAACCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGG 860 Query 42207 CAATAAGTCTCTCTCCATA----ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCG 42262 ||| | ||| || |||| ||| || | ||| ||||| || |||||||| Sbjct 859 CAACTAATCTTTCAGCATATAAGACCT-CAGTATCAGTAATCCATCTTAATGCCCAATCA 801 Query 42263 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 42322 || || || | | ||| || || ||| || |||||||| | || | ||| || Sbjct 800 GCTTTTCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTT 741 Query 42323 CTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATG 42382 ||| |||| ||| ||||| || ||||| ||| ||||||||||||| |||||||| Sbjct 740 GGATCCTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATC 681 Query 42383 GCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGT 42442 || || || || || || || | || || | || || ||||||| |||| | Sbjct 680 ATAATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTT 621 Query 42443 TCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 42502 ||| ||||||||| || || || || ||| || ||||| || || ||||| | Sbjct 620 TCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAA 561 Query 42503 ATAAAATATTTTTCGTCCGGTGTTAATTTAT---TCCAATCATTGATATCTTTAGATATA 42559 || || ||| |||| || ||||||||| ||||||||| | ||||||| || | Sbjct 560 ATGAAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAA 501 Query 42560 TCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCA 42619 || | |||||| | |||||||||||||||||||| || || || | | ||| || ||| Sbjct 500 TCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCA 441 Query 42620 TGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 |||||| |||||| || |||||||||||| |||||| Sbjct 440 TGATATCTAATTGGAAACATAACAAATCTACGAGGATTT 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117975222800