Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 282 4e-71
>seq2332
Length=8947
Score = 282 bits (312), Expect = 4e-71
Identities = 611/911 (67%), Gaps = 39/911 (4%)
Strand=Plus/Minus
Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919
|||||||| || |||||| |||||||||||||| ||||| || |||| |||||||||
Sbjct 1316 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 1257
Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977
||||||||||| || ||||||| ||||| |||| ||| ||| || ||| | | ||
Sbjct 1256 TCCATAAAATCAAATGGATTTT--GAACATTATAGACTTTCTTATTACCAAATGCAACTA 1199
Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037
| ||||| || |||||||| || | || || ||| || | || |||||| |||| ||
Sbjct 1198 ATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAATA 1139
Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097
| | || || | || || || ||| | | ||||| |||||||||||||| | || |
Sbjct 1138 AACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATAA 1079
Query 13098 TGTCTCTTATTACGTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156
| | | | | |||| | ||| ||| || ||| ||| | | ||| |||
Sbjct 1078 TCTTTTCGACAAT-TTCTGGATCTGGTCTATTATTTAAATGAGCAAATAATAAACAAGCA 1020
Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216
|||||| || || ||||||||||||| |||| || |||||||| |||| ||| |||
Sbjct 1019 AAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACCTGGC 960
Query 13217 ATAA------------------GC------CCTCGTTTTTTAATCCAAAATATAGCAGCA 13252
|| || |||| ||| || | ||| || |||| |||
Sbjct 959 ATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGATGCA 900
Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312
|| || || ||| || || |||||||| || ||||| || | || |||||| ||||
Sbjct 899 AATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGCATAT 840
Query 13313 --GTACT-ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAG 13369
| || | | | | | ||||| || ||||| | |||||| | ||| ||
Sbjct 839 AAGACCTCAGTATCAGTA---ATCCATCTTAATGCCCAATCAGCTTTTCTTCTAATACAT 783
Query 13370 TTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTA 13429
|||| ||| || || |||||||| |||| |||||| || ||||||||||
Sbjct 782 GGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGTA 723
Query 13430 TCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489
|| || || | | ||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 722 TCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCATAA 663
Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549
|| || |||| || | | |||||||| | |||| |||| ||| ||||| |||
Sbjct 662 AATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTA 603
Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTT 13609
|| || || ||| |||||||| || || | || | ||| || | | |||| |
Sbjct 602 ACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCATCA 543
Query 13610 TCTGACAACTT---TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTC 13666
|| || || | |||||| | |||||||| |||||| | || ||| | |||
Sbjct 542 TCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAGTC 483
Query 13667 CAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAAC 13726
||||| || || | || ||||| || | ||| || || | ||| ||| ||||||
Sbjct 482 CAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAAC 423
Query 13727 ACAACGTATCT 13737
| ||| ||||
Sbjct 422 ATAACAAATCT 412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430969110927060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |