Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2332 282 4e-71 >seq2332 Length=8947 Score = 282 bits (312), Expect = 4e-71 Identities = 611/911 (67%), Gaps = 39/911 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||||||||| ||||| || |||| ||||||||| Sbjct 1316 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 1257 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||||||||| || ||||||| ||||| |||| ||| ||| || ||| | | || Sbjct 1256 TCCATAAAATCAAATGGATTTT--GAACATTATAGACTTTCTTATTACCAAATGCAACTA 1199 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | ||||| || |||||||| || | || || ||| || | || |||||| |||| || Sbjct 1198 ATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAATA 1139 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | | || || | || || || ||| | | ||||| |||||||||||||| | || | Sbjct 1138 AACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATAA 1079 Query 13098 TGTCTCTTATTACGTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156 | | | | | |||| | ||| ||| || ||| ||| | | ||| ||| Sbjct 1078 TCTTTTCGACAAT-TTCTGGATCTGGTCTATTATTTAAATGAGCAAATAATAAACAAGCA 1020 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 |||||| || || ||||||||||||| |||| || |||||||| |||| ||| ||| Sbjct 1019 AAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACCTGGC 960 Query 13217 ATAA------------------GC------CCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || |||| ||| || | ||| || |||| ||| Sbjct 959 ATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGATGCA 900 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || || ||| || || |||||||| || ||||| || | || |||||| |||| Sbjct 899 AATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGCATAT 840 Query 13313 --GTACT-ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAG 13369 | || | | | | | ||||| || ||||| | |||||| | ||| || Sbjct 839 AAGACCTCAGTATCAGTA---ATCCATCTTAATGCCCAATCAGCTTTTCTTCTAATACAT 783 Query 13370 TTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTA 13429 |||| ||| || || |||||||| |||| |||||| || |||||||||| Sbjct 782 GGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGTA 723 Query 13430 TCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 || || || | | ||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 722 TCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCATAA 663 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549 || || |||| || | | |||||||| | |||| |||| ||| ||||| ||| Sbjct 662 AATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTA 603 Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTT 13609 || || || ||| |||||||| || || | || | ||| || | | |||| | Sbjct 602 ACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCATCA 543 Query 13610 TCTGACAACTT---TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTC 13666 || || || | |||||| | |||||||| |||||| | || ||| | ||| Sbjct 542 TCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAGTC 483 Query 13667 CAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAAC 13726 ||||| || || | || ||||| || | ||| || || | ||| ||| |||||| Sbjct 482 CAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAAC 423 Query 13727 ACAACGTATCT 13737 | ||| |||| Sbjct 422 ATAACAAATCT 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969110927060