Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 235 1e-56
seq2023 167 5e-36
seq2193 154 3e-32
>seq2332
Length=8947
Score = 235 bits (260), Expect = 1e-56
Identities = 613/931 (66%), Gaps = 43/931 (5%)
Strand=Plus/Plus
Query 268699 TAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGT 268758
||||||||| || |||||||| || ||| || ||| | ||||| | || |
Sbjct 411 TAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAGA 470
Query 268759 TGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAA 268818
|| || |||||||||| |||||| | ||| | | | || ||| ||||||| | |
Sbjct 471 AGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAAGATTTACATGATTGGAGAGA 530
Query 268819 T---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875
| ||||| || |||||| || || ||| | | || || ||||| |
Sbjct 531 TAAATTAAATGATGATGAAAGATACTTCATTTCTCGAGTATTAGCATTCTTTGCTGCATC 590
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||||| ||||| |||||| || | || || || | ||| || || ||||||||
Sbjct 591 TGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTTCAAATTCCTGA 650
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
||| | || ||||| || ||||| || || ||||||||||||||||| | ||
Sbjct 651 AGCTAAATCATTTTATGGTTTCCAAATTATGATTGAAAATATTCATTCAGAAACTTATTC 710
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC-TATTTTCTTCTA 269054
|| ||||| ||||||||||| | ||| ||| | || | || ||||| | |||
Sbjct 711 CCTTTTAATTGATACTTATATTAAGGAT-CCAAAGGAAGCTGATTACTTATTTAATGCTA 769
Query 269055 TGAGAAC-TATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113
| |||| ||| ||| | |||| |||| |||| ||||| | | |||||| | |||
Sbjct 770 T-TGAACATATTCCATGTATTAGAAGAAAAGCTGATTGGGCATTAAGATGGATTACTGAT 828
Query 269114 AGCG-CGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
| | | || || | ||||| |||||||| ||||| || || |||||||| ||||||
Sbjct 829 ACTGAGGTCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCCGTTGAAGGTATTTTCTTT 888
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCT---------------- 269214
|| || ||||| |||| || ||||| ||||||||||| |
Sbjct 889 AGTGGATCATTTGCATCTATTTTCTGGTTAAAGAAAAGAGGTTTGATGCNNNNNNNNNNN 948
Query 269215 --------TATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266
|||||||| |||||||| || || ||||| || | || || |||||||||
Sbjct 949 NNNNNNNNNATGCCAGGTTTAACTTTTTCAAATGAATTAATTTGTAGAGATGAAGGTTTA 1008
Query 269267 CACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGAT 269326
|| || || ||||||||||||||| || ||| | | | ||| || |||
Sbjct 1009 CATACTGATTTTGCTTGTTTATTATTTGCTCATT---TAAATAATAGACCAGATCCAGAA 1065
Query 269327 AGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCT 269386
| || | | ||||| | | ||| ||| | | |||| |||| | | || || ||
Sbjct 1066 ATTGTCGAAAAGATTATTGTTGAAGCAGTTGATATTGAAAAGGAATATTTCACTGATGCA 1125
Query 269387 CTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTA 269446
|| | | | | | |||||||| || |||| |||| ||||| || | || ||
Sbjct 1126 TTACCAGTTAGTTTATTAGGTATGAACAGTAAATTGATGTGTCAATATGTTGAATTTGTT 1185
Query 269447 TCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA---TATAACGTTGAAAATCCG 269503
| |||||||| | || | || || || ||| ||| ||||| ||| |||||||
Sbjct 1186 GCCGATAGATTATTAGTTGCATTTGG---TAATAAGAAAGTCTATAATGTTCAAAATCCA 1242
Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTA 269563
||| ||||||||| ||||| ||||||| ||||| |||| || || || ||| | ||
Sbjct 1243 TTTGATTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTT 1302
Query 269564 AGTAACTATCAGAAAATGGGTGTAATGTCTA 269594
| | ||||| || ||||| ||| |||
Sbjct 1303 TCTGATTATCAAAAGGCTGGTGTTATGGCTA 1333
>seq2023
Length=11923
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | |||| ||||| |||||||| || || || || |||||||||
Sbjct 4140 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 4081
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| ||||||| ||| || |||||||| |||| || ||||| ||||| ||
Sbjct 4080 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 4021
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || || || ||||| | ||| ||||| || | || || || ||| ||
Sbjct 4020 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACT 3961
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|||| ||||||||||||||||| | || || || || || ||||||||
Sbjct 3960 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911
>seq2193
Length=52601
Score = 154 bits (170), Expect = 3e-32
Identities = 194/264 (73%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| |||||| || ||||| || ||||| || |||||
Sbjct 24827 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 24768
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||||||||||||| | ||| || ||||||||||| | | |||||||| |||
Sbjct 24767 GATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 24708
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| || || || | || ||||| || | || || || |||
Sbjct 24707 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 24648
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569
|| |||| ||||| ||||||||||| | || || || || || |||||| | | |
Sbjct 24647 ACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAGATTTGCATTGTTAATGTA 24588
Query 104570 G-TAT-TTATTAGAGTAATAATTA 104591
| ||| | ||| || |||||||||
Sbjct 24587 GTTATATAATTTGATTAATAATTA 24564
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| |||||| || ||||| || ||||| || ||||||
Sbjct 25055 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA 24996
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | ||||||||||||||||| ||| || ||||| ||||| | | |||||||| |||
Sbjct 24995 GACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 24936
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || ||||| || | ||| || || || | || || || |||
Sbjct 24935 GGAATACCTTCCTTGTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCA 24876
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| || || ||||||||||| | || || || || || |||||
Sbjct 24875 ACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826
Score = 140 bits (154), Expect = 7e-28
Identities = 172/234 (74%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 104328 TTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385
||||| || ||||||| || | |||| |||||| |||||||| || || || || ||
Sbjct 25287 TTATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25228
Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445
|| |||| ||||||||||||||| | ||| || ||||| ||||| | | ||||||||
Sbjct 25227 ATCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATC 25168
Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505
||||| || ||||| || || || || || | || ||||| || | || || ||
Sbjct 25167 TGGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGA 25108
Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || |||| ||||| ||||||||||| | || || || || || |||||
Sbjct 25107 TTCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151361076701240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |