Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2332 235 1e-56 seq2023 167 5e-36 seq2193 154 3e-32 >seq2332 Length=8947 Score = 235 bits (260), Expect = 1e-56 Identities = 613/931 (66%), Gaps = 43/931 (5%) Strand=Plus/Plus Query 268699 TAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGT 268758 ||||||||| || |||||||| || ||| || ||| | ||||| | || | Sbjct 411 TAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAGA 470 Query 268759 TGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAA 268818 || || |||||||||| |||||| | ||| | | | || ||| ||||||| | | Sbjct 471 AGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAAGATTTACATGATTGGAGAGA 530 Query 268819 T---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | ||||| || |||||| || || ||| | | || || ||||| | Sbjct 531 TAAATTAAATGATGATGAAAGATACTTCATTTCTCGAGTATTAGCATTCTTTGCTGCATC 590 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||||| ||||| |||||| || | || || || | ||| || || |||||||| Sbjct 591 TGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTTCAAATTCCTGA 650 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||| | || ||||| || ||||| || || ||||||||||||||||| | || Sbjct 651 AGCTAAATCATTTTATGGTTTCCAAATTATGATTGAAAATATTCATTCAGAAACTTATTC 710 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC-TATTTTCTTCTA 269054 || ||||| ||||||||||| | ||| ||| | || | || ||||| | ||| Sbjct 711 CCTTTTAATTGATACTTATATTAAGGAT-CCAAAGGAAGCTGATTACTTATTTAATGCTA 769 Query 269055 TGAGAAC-TATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT 269113 | |||| ||| ||| | |||| |||| |||| ||||| | | |||||| | ||| Sbjct 770 T-TGAACATATTCCATGTATTAGAAGAAAAGCTGATTGGGCATTAAGATGGATTACTGAT 828 Query 269114 AGCG-CGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 | | | || || | ||||| |||||||| ||||| || || |||||||| |||||| Sbjct 829 ACTGAGGTCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCCGTTGAAGGTATTTTCTTT 888 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCT---------------- 269214 || || ||||| |||| || ||||| ||||||||||| | Sbjct 889 AGTGGATCATTTGCATCTATTTTCTGGTTAAAGAAAAGAGGTTTGATGCNNNNNNNNNNN 948 Query 269215 --------TATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266 |||||||| |||||||| || || ||||| || | || || ||||||||| Sbjct 949 NNNNNNNNNATGCCAGGTTTAACTTTTTCAAATGAATTAATTTGTAGAGATGAAGGTTTA 1008 Query 269267 CACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGAT 269326 || || || ||||||||||||||| || ||| | | | ||| || ||| Sbjct 1009 CATACTGATTTTGCTTGTTTATTATTTGCTCATT---TAAATAATAGACCAGATCCAGAA 1065 Query 269327 AGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCT 269386 | || | | ||||| | | ||| ||| | | |||| |||| | | || || || Sbjct 1066 ATTGTCGAAAAGATTATTGTTGAAGCAGTTGATATTGAAAAGGAATATTTCACTGATGCA 1125 Query 269387 CTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTA 269446 || | | | | | |||||||| || |||| |||| ||||| || | || || Sbjct 1126 TTACCAGTTAGTTTATTAGGTATGAACAGTAAATTGATGTGTCAATATGTTGAATTTGTT 1185 Query 269447 TCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA---TATAACGTTGAAAATCCG 269503 | |||||||| | || | || || || ||| ||| ||||| ||| ||||||| Sbjct 1186 GCCGATAGATTATTAGTTGCATTTGG---TAATAAGAAAGTCTATAATGTTCAAAATCCA 1242 Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTA 269563 ||| ||||||||| ||||| ||||||| ||||| |||| || || || ||| | || Sbjct 1243 TTTGATTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTT 1302 Query 269564 AGTAACTATCAGAAAATGGGTGTAATGTCTA 269594 | | ||||| || ||||| ||| ||| Sbjct 1303 TCTGATTATCAAAAGGCTGGTGTTATGGCTA 1333 >seq2023 Length=11923 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||||| |||||||| || || || || ||||||||| Sbjct 4140 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 4081 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || |||||||| |||| || ||||| ||||| || Sbjct 4080 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 4021 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| | ||| ||||| || | || || || ||| || Sbjct 4020 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACT 3961 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | || || || || || |||||||| Sbjct 3960 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911 >seq2193 Length=52601 Score = 154 bits (170), Expect = 3e-32 Identities = 194/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || ||||| Sbjct 24827 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 24768 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||||||||| | ||| || ||||||||||| | | |||||||| ||| Sbjct 24767 GATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 24708 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || | || ||||| || | || || || ||| Sbjct 24707 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 24648 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || |||| ||||| ||||||||||| | || || || || || |||||| | | | Sbjct 24647 ACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAGATTTGCATTGTTAATGTA 24588 Query 104570 G-TAT-TTATTAGAGTAATAATTA 104591 | ||| | ||| || ||||||||| Sbjct 24587 GTTATATAATTTGATTAATAATTA 24564 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || |||||| Sbjct 25055 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA 24996 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||||| ||| || ||||| ||||| | | |||||||| ||| Sbjct 24995 GACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 24936 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | ||| || || || | || || || ||| Sbjct 24935 GGAATACCTTCCTTGTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCA 24876 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||||||||| | || || || || || ||||| Sbjct 24875 ACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 Score = 140 bits (154), Expect = 7e-28 Identities = 172/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 104328 TTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385 ||||| || ||||||| || | |||| |||||| |||||||| || || || || || Sbjct 25287 TTATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25228 Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 || |||| ||||||||||||||| | ||| || ||||| ||||| | | |||||||| Sbjct 25227 ATCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATC 25168 Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 ||||| || ||||| || || || || || | || ||||| || | || || || Sbjct 25167 TGGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGA 25108 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || |||| ||||| ||||||||||| | || || || || || ||||| Sbjct 25107 TTCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151361076701240