Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2181 89.7 8e-14 seq1542 82.4 1e-11 >seq2181 Length=15223 Score = 89.7 bits (98), Expect = 8e-14 Identities = 174/256 (68%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||||||||| ||||| ||||| ||||||||||| | | | || | Sbjct 14700 AGATCT-TGAGAGATAACATTCAAGGTATCACTAAGCCAGCTATTAGAAGATTAGCCAGA 14642 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || |||||| | |||| || | |||||||| || | | ||| ||||| Sbjct 14641 AGAGGTGGTGTTAAGCGTATTTCTGCTTTAATTTATGAAGAAGTTAGAGTTGTCTTGAAA 14582 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 || | | | ||||| |||||| | ||||| || ||||| || | ||| Sbjct 14581 CAATTTTTAGAAAATGTTATTAGAGATGCTGTTACTTATACTGAACACGCCAAGAGAAAG 14522 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 ||||| || ||| ||||| | || || || || || | ||||| | | | |||||| Sbjct 14521 ACTGTTACTTCCTTGGATGTTGTTTACGCCTTAAAGAGACAAGGTAGAACCTTATATGGT 14462 Query 16688 TTTGGAAGTTAATCTT 16703 || || |||||| || Sbjct 14461 TTCGGTGGTTAATTTT 14446 >seq1542 Length=1516 Score = 82.4 bits (90), Expect = 1e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || ||||||||||| | | |||| | | ||||| | Sbjct 1299 GAGATAACATTCAAGGTATTACTAAGCCAGCTATTAGAAGATTGGCCAGAAGAGGTGGTG 1240 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | || | || | |||||||| || | | ||| ||||| ||| | Sbjct 1239 TTAAGCGTATTTCCGCTTTAATTTATGAAGAAGTTAGAGTTGTCTTGAAACAATTCTTAG 1180 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| ||| |||||| | |||||||| ||||| || | |||||||| || | Sbjct 1179 AAAACGTCATCAGAGATGCTGTTACTTATACCGAACACGCCAAGAGAAAGACTGTTACTT 1120 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | | ||| | || || || || || | ||||| | | | || ||||| || ||| Sbjct 1119 CTTTAGATGTTGTTTACGCCTTAAAGAGACAAGGTAGAACCTTATACGGTTTCGGTGGTT 1060 Query 16698 AATCTTCT 16705 || || || Sbjct 1059 AAACTACT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072886803290