Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 297 2e-75
>seq2332
Length=8947
Score = 297 bits (328), Expect = 2e-75
Identities = 611/912 (67%), Gaps = 41/912 (4%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||||||| |||||| ||||| ||||| || || || || | ||||| ||| |
Sbjct 1316 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 1257
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
|||||||||||||||||||||| | ||| | | ||| ||| ||| | | | ||||
Sbjct 1256 TCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCTTATTACCAAATGCAACTAAT 1197
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
|||||||| || |||||||| | |||||||||||| |||| || |||||||| | ||
Sbjct 1196 AATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAATAAA 1137
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424
| || || | || | || ||| | ||||| ||| || ||||||||||| ||
Sbjct 1136 CTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATAATC 1077
Query 21425 TTTATTA----TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGC 21480
||| | | || ||| | || || ||| || ||| | ||||| ||
Sbjct 1076 TTTTCGACAATTTCTGGATCT----GGTCTATTATTTAAATGAGCAAATAATAAACAAGC 1021
Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540
||||||| ||| ||||||||||| |||| ||||||||||| ||||| |||||||| ||
Sbjct 1020 AAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACCTGG 961
Query 21541 CATT------------------------AATCCTCTCTTTTTTAACCAAAATATTGACGC 21576
||| || ||||| || |||||||| || || || ||
Sbjct 960 CATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGATGC 901
Query 21577 AAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTA 21636
||||| ||| ||||||||| || |||||||||||||| |||||||||| |||| | ||
Sbjct 900 AAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGCATA 841
Query 21637 TGTAGA-TTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT-TAATACAA 21694
| ||| || |||| |||||| || |||||| | | |||||||| |||||||
Sbjct 840 T-AAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAG-CTTTTCTTCTAATACAT 783
Query 21695 TCAAT-TGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNN 21753
||| ||| |||||||| || || | | || ||| | | ||| | ||
Sbjct 782 GGAATATGT-TCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGT 724
Query 21754 NNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813
||| |||| ||||| |||||||| ||| || || || || ||
Sbjct 723 ATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCATA 664
Query 21814 AAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATT 21873
||| || | || || | | |||||| || | |||| || | || ||||||||
Sbjct 663 AAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATT 604
Query 21874 TACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTT 21933
|| || |||||| || ||||| ||||| |||| || || |||| ||| |
Sbjct 603 AACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCATC 544
Query 21934 ATCTGTTAATTT---TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGT 21990
||| ||||||| | ||||||| ||||||||| |||||| | |||||||| ||
Sbjct 543 ATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAGT 484
Query 21991 CCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAA 22050
|||||| || || || || || | ||| || |||| |||| | ||||||||
Sbjct 483 CCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAA 424
Query 22051 TATTACAAACCT 22062
|| ||||| ||
Sbjct 423 CATAACAAATCT 412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531883978637200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |