Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2193 111 4e-19 seq2023 91.5 3e-13 >seq2193 Length=52601 Score = 111 bits (122), Expect = 4e-19 Identities = 166/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||||| | || | |||||||| ||||| || || || || Sbjct 24789 TTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAA 24730 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| ||||| || ||||| ||||| |||||||| | || || Sbjct 24729 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGAC 24673 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || ||||| ||||| | || || ||||| || || | |||||| Sbjct 24672 ATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTT 24613 Query 288459 GACGAATATCTGCATT----ATGTTATTCTAATATTT--TTAATAATGTATCG 288505 |||||| || |||||| |||| || || |||| |||||||| |||| Sbjct 24612 GACGAAGATTTGCATTGTTAATGTAGTTATATAATTTGATTAATAATTAATCG 24560 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | | || | |||||||||||||| || || ||||| Sbjct 25017 TTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAA 24958 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| ||||| || ||||| || || || ||||| | ||| || Sbjct 24957 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGATTTAAC 24901 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | || ||||| ||||| | ||||| ||||| || || | ||||| Sbjct 24900 GTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTT 24841 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 24840 GACGAAAATTTGCAT 24826 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || |||| | || | |||||||| ||||| || || ||||| Sbjct 25245 TTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAA 25186 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| ||||| || ||||| || || |||||||| | || || Sbjct 25185 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGAC 25129 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || ||||| ||||| | || || ||||| || || | ||||| Sbjct 25128 ATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTT 25069 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 25068 GACGAAAATTTGCAT 25054 >seq2023 Length=11923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | || ||||||||||| || || || || Sbjct 4105 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAA 4046 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | ||||| | ||| || ||||| || || ||||| || | ||| || || Sbjct 4045 GATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATT 3986 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || ||||| ||||| | || || ||||| || || | |||||||| Sbjct 3985 GTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGAC 3926 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 3925 GAAAATTTGCATT 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179616160765340