Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2193 111 4e-19
seq2023 91.5 3e-13
>seq2193
Length=52601
Score = 111 bits (122), Expect = 4e-19
Identities = 166/233 (71%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || ||||||| | || | |||||||| ||||| || || || ||
Sbjct 24789 TTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAA 24730
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| ||||| || ||||| ||||| |||||||| | || ||
Sbjct 24729 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGAC 24673
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || |||| || ||||| ||||| | || || ||||| || || | ||||||
Sbjct 24672 ATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTT 24613
Query 288459 GACGAATATCTGCATT----ATGTTATTCTAATATTT--TTAATAATGTATCG 288505
|||||| || |||||| |||| || || |||| |||||||| ||||
Sbjct 24612 GACGAAGATTTGCATTGTTAATGTAGTTATATAATTTGATTAATAATTAATCG 24560
Score = 105 bits (116), Expect = 2e-17
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || ||||| | | || | |||||||||||||| || || |||||
Sbjct 25017 TTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAA 24958
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| ||||| || ||||| || || || ||||| | ||| ||
Sbjct 24957 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGATTTAAC 24901
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||| || || | || ||||| ||||| | ||||| ||||| || || | |||||
Sbjct 24900 GTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTT 24841
Query 288459 GACGAATATCTGCAT 288473
|||||| || |||||
Sbjct 24840 GACGAAAATTTGCAT 24826
Score = 100 bits (110), Expect = 7e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || || |||| | || | |||||||| ||||| || || |||||
Sbjct 25245 TTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAA 25186
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| ||||| || ||||| || || |||||||| | || ||
Sbjct 25185 AATCAAACGTTGTTGA---TCTGGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGAC 25129
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || |||| || ||||| ||||| | || || ||||| || || | |||||
Sbjct 25128 ATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTT 25069
Query 288459 GACGAATATCTGCAT 288473
|||||| || |||||
Sbjct 25068 GACGAAAATTTGCAT 25054
>seq2023
Length=11923
Score = 91.5 bits (100), Expect = 3e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || ||||||||||| || || || ||
Sbjct 4105 TTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAA 4046
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| | | ||||| | ||| || ||||| || || ||||| || | ||| || ||
Sbjct 4045 GATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATT 3986
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| | || || ||||| || || | ||||||||
Sbjct 3985 GTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGAC 3926
Query 288462 GAATATCTGCATT 288474
||| || ||||||
Sbjct 3925 GAAAATTTGCATT 3913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179616160765340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |