Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2193 100 3e-16 >seq2193 Length=52601 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || || ||||| || ||| ||||||||||| ||||| |||| Sbjct 25053 ACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGA 24994 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| | |||| |||| |||||||||||||| || | || || || || | || Sbjct 24993 CAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 24934 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| |||| | || | || | | | ||||| ||||| | Sbjct 24933 AATACCTTCCTTGT-CTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCAA 24875 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || |||| ||||| || || |||||||| Sbjct 24874 CTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| |||||||| | ||| || ||||| || || |||||||| || ||||| Sbjct 25287 TTATTGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 25228 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| | | ||| | |||| || | |||||||||||||| || | || || || || Sbjct 25227 ATCGGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATC 25168 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 42154 | || | | |||||||| |||||| |||| | | | ||||| || Sbjct 25167 TGGAGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGA 25108 Query 42155 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || | || ||||| || || |||| ||||| || || |||||||| Sbjct 25107 TTCAACTTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195620895200