Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2193 118 1e-21 seq2023 95.1 1e-14 seq2332 86.0 6e-12 >seq2193 Length=52601 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || |||||| | ||| || Sbjct 25268 CTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACCG 25209 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | ||||| ||||| || || || ||||| ||||| || Sbjct 25208 TCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 25149 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | ||||| ||||| || ||||| | |||| Sbjct 25148 TCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATG 25089 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || ||||||||||| Sbjct 25088 GTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || ||||||||||| || || || ||| | ||| || Sbjct 24812 CTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCG 24753 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||| ||||| || || || ||||| ||||| ||| Sbjct 24752 TCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTA 24693 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | ||||| ||||| || ||||| | |||| Sbjct 24692 TCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATG 24633 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| || || || |||||||| Sbjct 24632 GTCTTACCAGTTAAAGTCTTGACGAAGATTTGCAT 24598 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | || ||||||||||| || || || || | ||| || Sbjct 25040 CTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCG 24981 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||| ||||| || || || ||||| ||||| || Sbjct 24980 TCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 24921 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| ||| | || | || | ||||| ||||| || ||||| | ||| | Sbjct 24920 TCTTGAATTTTAGATTTAA-CGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGAT 24862 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || ||||||||||| Sbjct 24861 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 >seq2023 Length=11923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || |||||||||||||| || || || | ||| || | Sbjct 4128 CTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCA 4069 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || || | || |||| ||| ||||| || ||||| ||||| || Sbjct 4068 TCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 4009 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || ||||| || | ||||| ||||| || ||||| | |||| Sbjct 4008 TCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATA 3949 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || ||||||||||| Sbjct 3948 GTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 3914 >seq2332 Length=8947 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 138105 TCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCATAAAATTAAAAGGATTACTC 138164 |||||||| ||||||||||| | | || || || |||||||| ||| ||||| | Sbjct 1292 TCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT-TG 1234 Query 138165 GCCATAAAATGCTTTGGCTGATTA--AGAT-CGACAAGCAAACGATCGGCTACAAATTCA 138221 ||| | | |||| || |||| | || | || | || | |||||| ||||||||| Sbjct 1233 AACATTATAGACTTT--CTTATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCA 1176 Query 138222 ATGTATCGACACATCGATTCGGTGTTCATGCCCAACAAACTGCAAGGCAACGCCGTTTTA 138281 | ||| |||||||| ||| ||||||| || || ||||| || || || | Sbjct 1175 ACATATTGACACATCAATTTACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGTG 1116 Query 138282 AAAAATTCCTTTTCAATTTCTACCGCTTC 138310 ||| ||||||||||||| || || ||||| Sbjct 1115 AAATATTCCTTTTCAATATCAACTGCTTC 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988905398800