Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2193 104 6e-17 seq2023 89.7 1e-12 >seq2193 Length=52601 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || |||||||| | ||||||||||| |||||| || || ||||| | ||||| || Sbjct 25023 AGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGCTTACC 24964 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| || | ||| || || || ||| ||| ||||| || ||||| || || Sbjct 24963 AGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGATTT 24904 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| |||| ||||| | | ||| || || || ||||| |||||||| || | || Sbjct 24903 AACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGGT 24844 Query 199612 TTTCACAAAAATTTG 199626 || || |||||||| Sbjct 24843 CTTGACGAAAATTTG 24829 >seq2023 Length=11923 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||| | || || |||||||||| ||||||||||| ||||| || || Sbjct 4129 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 4070 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || || ||||| | | || ||||| || ||| ||||| Sbjct 4069 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4010 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| || || || | ||||| | | ||| || || || || || Sbjct 4009 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 3950 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 |||||||| || | || || || |||||||| |||||| | ||| Sbjct 3949 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTG---CATTTTTGGCTT 3905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178883384519510