Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq918 129 7e-25 seq2231 105 8e-18 seq2175 84.2 3e-11 seq330 84.2 3e-11 >seq918 Length=18345 Score = 129 bits (142), Expect = 7e-25 Identities = 464/713 (65%), Gaps = 22/713 (3%) Strand=Plus/Minus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 ||||| || |||||||| |||| |||| | || ||||| || ||||||||||||| ||| Sbjct 9922 CAAACTGAAACTGGTACTCCATTTATGTTATATAAAGATGCTTGTAACCAAAAGACCAAT 9863 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 ||||||||||| ||| | || || ||||| | ||| ||||| | |||| | || Sbjct 9862 CAAAAGAATTTAGGTATTATTAAATCATCCAATTTATGTTGTGAAATTGTTGAATATTCA 9803 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 || || ||||| |||||| | || ||||| || | || | ||| || Sbjct 9802 TCACCTGAAGAAGTTGCTGTTTGTAACTTAGCTTCAATTGCCTTACCATCATTTGTTGA- 9744 Query 112479 CCAGAGACAAAGA-CATT-------TGATTATGAAAAACTCCACGAAGTTACGAAAACTG 112530 | ||| | || |||| | ||| ||| ||| | || ||| |||| || | || Sbjct 9743 -AAAAGATGATGATCATTCATGGTATAATTTTGATAAATTACATGAAATTACCAAGATTG 9685 Query 112531 TCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGT 112589 | || || |||| | |||||||||| | || | ||| || ||| ||| || Sbjct 9684 TTACTCGTAATTTAAATAAAGTTATTGATCGTAACTATTATCCAGTTCCAGA-AGCCAAA 9626 Query 112590 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTC 112649 | || || |||| | | | ||||||| | || || |||||| | || |||| |||| Sbjct 9625 ACTTCCAACATGAAAAATAGACCAATTGCCTTGGGGGTACAAGGTTTGGCTGATGCATTC 9566 Query 112650 AT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATT 112708 || | || || |||||||||| | ||||| | ||| | ||| | || || Sbjct 9565 ATGGCATTAAGATTAC-CATTTGATTCTCAAGAAGCCAGAGAATTAAATATTCAAATCTT 9507 Query 112709 TGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCC 112768 ||| || || ||||| || || | || | | || || || | | || ||||| Sbjct 9506 TGAAACTATTTATCATGCTGCCGTGGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCC 9447 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828 |||||| | | | ||||| || || || || || | | |||| |||| | | ||| Sbjct 9446 TTATGAATCTTATCCAGGTTCACCTGCATCTCAGGGTTTATTACAATATGATTTAT-GGA 9388 Query 112829 AGGTGAGACCAAGCTTCACTA--CGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGA 112884 | | ||||| || | || || ||||| | | ||| || ||| ||| | Sbjct 9387 ATAGAAAACCAA-CTGAATTATGGGATTGGGATACCTTAAAGCAAAACATGGCAA--AAC 9331 Query 112885 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 112944 | || | | || |||||| | || || |||||||| || || || ||||||||| Sbjct 9330 ATGGATTAAGAAATTCTCTTTTAGTTGCCCCTATGCCAACTGCTTCAACATCACAAATCT 9271 Query 112945 TGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 | |||||||||||||| || ||||| || || | ||||| ||| |||||| Sbjct 9270 TAGGTAATAATGAATGTTTCGAACCATATACTTCAAACATTTATTCAAGAAGA 9218 >seq2231 Length=145420 Score = 105 bits (116), Expect = 8e-18 Identities = 219/328 (67%), Gaps = 15/328 (5%) Strand=Plus/Minus Query 15970 TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG 16029 ||||||||||||||||||| ||||| || || | ||| || || ||||| || | Sbjct 126533 TATCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGCTCATCGTTAG 126474 Query 16030 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 16080 | ||||| ||| ||| || |||| || | |||||||||||||||| Sbjct 126473 C------ACCACTTGCATTGCCTTTCGCACGCAGCTTCCCAATCGCATCAATCTCATCAA 126420 Query 16081 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 16140 ||||| || | || |||||| ||||| || || | || |||||||| | Sbjct 126419 CAAAGACAATTGAAGGAGCATTTTCACGAGCAGTTTTGAATAAGTCACGTACACGAGATG 126360 Query 16141 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACAT 16200 | |||||||| |||||||| || ||||| | | | ||| | ||| || || Sbjct 126359 CACCCACACCCACAAACATTTCTACAAATTCAGAACCAGAAACAGAAAAGAAAGGTACCC 126300 Query 16201 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGA 16260 | |||||| ||| |||| | ||| |||||||||||||| || ||||| ||||| | Sbjct 126299 CTGCTTCACCAGCAGTGGCCCTGGCAAGAAGAGTCTTACCAGTTCCTGGAGGACCCGAAA 126240 Query 16261 GGAGGGCACCTCGTGGAATCTTGGCGCC 16288 | | || |||| || || || || || Sbjct 126239 GAATTGCCCCTCTAGGGATTTTCGCACC 126212 >seq2175 Length=31899 Score = 84.2 bits (92), Expect = 3e-11 Identities = 267/407 (66%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | ||||| | ||| | ||| | || | |||||| ||||| || | || Sbjct 19342 ATCAAATCTTCCTGGTCTAAGCAACGCCTTGTCCAAAATATCAGGACGATTAGTACCTGC 19401 Query 15947 GATGACAACAATACCTGTTT--CGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | ||||||| | || | | ||||||||||||||| || ||| | ||||| Sbjct 19402 CAAAACAACAACA--TGATCACCCGAATCAAAACCATCCATTTCAACCAACAATTGGTTC 19459 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 | || | ||| ||||| ||||| || || | ||| || | || | || | | Sbjct 19460 AATGTATTTTCACGTTCGTCATTTCCTCCAATTCTTCCATTACCTCTTTCTCTACCAATG 19519 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 16123 |||||||| ||||||| ||| | ||| | || |||| ||||| | ||| || || Sbjct 19520 GCATCAATTTCATCAACGAATATAATGGAAGGAGCCATTTCACGAGCTGTCTTGAATAAG 19579 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 || || ||||| || || || || |||||||| ||||| || | || |||| || Sbjct 19580 -TCACGAACACGAGAAGCACCAACCCCTACAAACATTTCCACGAATTCTGAACCGGAGAC 19638 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | | || || ||| | |||||| || ||||| || | ||| || ||||| | Sbjct 19639 ACT-CAAAAATGGAACACCTGCTTCACCAGCTGTGGCTTTTGCCAAAAGTGTTTTACCAG 19697 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||| || ||| | | | ||||||| ||||| ||||| ||| Sbjct 19698 TACCAGGTGGACCAGATAAAATTGCACCTCTAGGAATTTTGGCTCCA 19744 >seq330 Length=28712 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 112278 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGAC 112337 |||| ||||| | | || ||||| || || ||| ||||||||||||||||| || Sbjct 5848 TGGATGGCTATATTAGAATCCCAAACTGAAACGGGTGGTCCATATATGCTTTACAAGGAT 5907 Query 112338 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGT 112397 || ||||| |||| |||||||| |||||||| || || ||| ||||||| | ||| Sbjct 5908 GCTTGTAATAAAAAATCAAATCAAAAAAATTTGGGCGTCATAAAGTCTTCCAACTTATGT 5967 Query 112398 ACAGAAATCTTGGA 112411 |||||| |||| Sbjct 5968 TGTGAAATCATGGA 5981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722769021600