Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq918 147 3e-30 seq2332 84.2 3e-11 >seq918 Length=18345 Score = 147 bits (162), Expect = 3e-30 Identities = 524/816 (64%), Gaps = 11/816 (1%) Strand=Plus/Plus Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | |||||| ||| || ||||| ||||| | ||| || ||||| ||||| Sbjct 9807 TATTCAACAATTTCACAACATAAATTGGATGATTTAATAATACCTAAATTCTTTTGATTG 9866 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 | || ||| || ||||| ||||| | ||| |||| ||||||||||| || || | Sbjct 9867 GTCTTTTGGTTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTGGGCT 9926 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCC 110511 | | |||| | ||||| | || | ||| || | ||||||| Sbjct 9927 TCCAAGATGGAATACCATAATTTTTGTGCCTTAATGGTTTGTCTACCACGACCTTCACGT 9986 Query 110512 TCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCC 110571 || || || || || | |||||||| | || || ||||||| | || || Sbjct 9987 TCATATTTTTCATATAATTGTTCAAATTCATCACCATAAACATCAGGTAACCCAGGAGCT 10046 Query 110572 TTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCA 110631 | | || | || | | ||||| ||| | || || |||||||| || | ||| Sbjct 10047 TCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACTCTCTTCATAAATAAATCA 10106 Query 110632 GGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGG 110691 |||||||| | || | ||| | || | | | | ||||| | |||||| || Sbjct 10107 GGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGATTTTTT 10166 Query 110692 CGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGAT 110751 | | || | ||| || | ||||| || ||||||||||| | ||| | || | | | Sbjct 10167 CTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAAAGGGCAAATGCT 10226 Query 110752 CC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTG 110805 || |||| || ||| || | |||||| || || ||| |||||| || | Sbjct 10227 CCTGGTCTCTTATTACCACCT---TGATCAACATAACGGGCGGTGTTATTGAAAACACGT 10283 Query 110806 AGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA 110865 | ||| || ||||| || | ||| ||| || ||||| ||| | | | | | | Sbjct 10284 ACCATGGGGATAATACCGTTGGAAGTACCGTTGGTACCGGCAATATATGCCCCAGTAGAA 10343 Query 110866 CGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCT 110925 ||||| | || ||||| | |||||||||||| || | ||| ||| ||||| | Sbjct 10344 CGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAAAGCACAAGTT 10403 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 | | ||| |||| || |||||||| ||||| | || | |||| || || || ||| Sbjct 10404 TTCAAAGTATCATAGATCCCATCAATTGAATCATCTTTCATAGCAACTAAGAAACATGAA 10463 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045 ||||| || |||| || || || ||||| || | || |||| ||||| |||| | Sbjct 10464 GACATTTGTGGACTTGGAGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAAC 10523 Query 111046 CCTTGGGACATCTTGTTGTATGTGTCGAGTGC-GGAGGGTACATCTTTACCGTGAATACC 111104 ||| |||||| | || || | || | | ||||| | ||| ||||| |||||||| Sbjct 10524 TTTTGTGACATCATATTATAAGATTCAATAACTCGAGGG-ATATCATTACCATGAATACC 10582 Query 111105 AATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 |||||| |||| ||||| | || ||| || |||| Sbjct 10583 AATGGCCACTCTCATGATTAAATGTTGTGGTCTTTC 10618 >seq2332 Length=8947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/237 (69%), Gaps = 13/237 (5%) Strand=Plus/Minus Query 119824 CATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTT 119883 |||||||||| |||||| | |||||| ||||| | | |||||| | | | ||||| Sbjct 667 CATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTT 608 Query 119884 CAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACT----TTATGAA-TTT 119938 || |||||| ||||| ||| |||| ||||||||||| |||| ||||| | | Sbjct 607 CATTAACAATACCATCAGATGCAGCAAAGAATGCTAA----TACTCGAGAAATGAAGTAT 552 Query 119939 CTGTTCATTATCGTTGAGTGT---TTTCCAGTCGTCCATATCTTTAGACAAGTCCACCTC 119995 || ||||| ||| || | | | | |||| || | | ||||||| || || | || Sbjct 551 CT-TTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTC 493 Query 119996 TTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAAGTTCAGGATA 120052 |||||| ||||| || | ||| || || || | || ||||| |||| |||| Sbjct 492 TTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATA 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957373634000