Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq918 154 2e-32 seq2231 98.7 1e-15 seq1950 98.7 1e-15 >seq918 Length=18345 Score = 154 bits (170), Expect = 2e-32 Identities = 466/710 (66%), Gaps = 16/710 (2%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 |||||| ||| ||||| | || || ||||| || |||||||||||||| |||||||| Sbjct 9218 TCTTCTTGAATAAATGTTTGAAGTATATGGTTCGAAACATTCATTATTACCTAAGATTTG 9277 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || || || || |||||||| || || | |||||| || | | || | || || Sbjct 9278 TGATGTTGAAGCAGTTGGCATAGGGGCAACTAAAAGAGAATTTCTTAATCCATGTT--TT 9335 Query 106045 G--ATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACA 106100 | ||| || ||| | |||||| || || || || ||||||| |||| | | Sbjct 9336 GCCATGTTTTGCTTTAAGGTATCCCAATCCCATAATTCAG-TTGGTTTTCTATTCC-ATA 9393 Query 106101 TATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTT 106160 |||| |||| | | || || || | || ||||| | | | ||||| | ||||| Sbjct 9394 AATCATATTGTAATAAACCCTGAGATGCAGGTGAACCTGGATAAGATTCATAAGGACCTT 9453 Query 106161 GGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 106220 ||| || |||||| | |||| || || ||||| || ||||||||||| Sbjct 9454 CTTCTTGGGCTAATTCAATAGAAGTTTCCACGGCAGCATGATAAATAGTTTCAAAGATTT 9513 Query 106221 GAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACAT 106280 || ||| | || ||||||| | |||||||||| | | | || ||| ||| Sbjct 9514 GAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGGTAATCTTAATGCCATGAATGCAT 9573 Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG 106340 | || | |||||| || ||||| |||| ||||| | | ||| || || || || Sbjct 9574 CAGCCAAACCTTGTACCCCCAAGGCAATTGGTCTATTTTTCATGTTGGAAGTTTTGGCT- 9632 Query 106341 TCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 ||| ||| |||||| | || | ||||| ||| |||| ||| ||||||||||| Sbjct 9633 TCTGGAACTGGATAATAGTTACGATCAATAACTTTATTTAAATTACGAGTAACAATCTTG 9692 Query 106400 GTGATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCGAGTC-TCTTCATTGACATAC 106453 || |||||||| | ||| ||| ||| || | || || |||| | ||| | Sbjct 9693 GTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCATCATCTTTTTCAACAAAT 9752 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 ||| | ||| ||||| || || || |||||||| || || || || || Sbjct 9753 GATGGTAAGGCAATTGAAGCTAAGTTACAAACAGCAACTTCTTCAGGTGATGAATATTCA 9812 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | |||||| ||| || ||||| ||||| | || ||||||||||| || ||||| Sbjct 9813 ACAATTTCACAACATAAATTGGATGATTTAATAATACCTAAATTCTTTTGATTGGTCTTT 9872 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 | ||| || ||||| || || | ||| | || || || || || || || Sbjct 9873 TGGTTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTTG 9922 >seq2231 Length=145420 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/297 (67%), Gaps = 15/297 (5%) Strand=Plus/Minus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 ||||||||||||||||||| |||||||| || | ||| || || ||||| || | Sbjct 126533 TATCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGCTCATCGTTAG 126474 Query 9337 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 9387 | ||||| ||| ||| || |||| || | |||||||||||||||| Sbjct 126473 C------ACCACTTGCATTGCCTTTCGCACGCAGCTTCCCAATCGCATCAATCTCATCAA 126420 Query 9388 TGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG 9447 |||||||| | || |||||| || || ||| || | || || || | | Sbjct 126419 CAAAGACAATTGAAGGAGCATTTTCACGAGCAGTTTTGAATAAGTCACGTACACGAGATG 126360 Query 9448 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACAT 9507 | |||||||| |||||||| || ||||| | | | ||| | ||| || || Sbjct 126359 CACCCACACCCACAAACATTTCTACAAATTCAGAACCAGAAACAGAAAAGAAAGGTACCC 126300 Query 9508 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG 9564 | |||||| ||| |||| | ||| |||||||||||||| || ||||| ||||| Sbjct 126299 CTGCTTCACCAGCAGTGGCCCTGGCAAGAAGAGTCTTACCAGTTCCTGGAGGACCCG 126243 >seq1950 Length=3064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| |||||||| || || || || | ||||| |||||||||||| |||||| Sbjct 500 TATGGCCGTGTTGCTCCTCGTTCTGGATTAGCTGTCAAGCATGGTATTTCTACTGGTGCT 559 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 || ||||||||| | || |||| ||||||||| ||||| || | || ||||| | || Sbjct 560 GGAGTTATTGATGCTGATTATAGAGGTGAAGTTAAAGTTGTATTATTTAATCATAGTGAT 619 Query 155164 AAAGACTTTGAGGTAAA 155180 ||||| ||||| || || Sbjct 620 AAAGATTTTGAAGTTAA 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962141857200