Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2193 118 9e-22 seq2023 114 1e-20 >seq2193 Length=52601 Score = 118 bits (130), Expect = 9e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 ||| ||||||||| || || || || ||||| ||||| ||||||||| ||| ||| Sbjct 24593 TAACAATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAAT 24652 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||| || || | | | || ||||| |||||| || || || || | || || Sbjct 24653 CTTCTGACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAG 24712 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| | | || ||||| || || ||||||||||| || |||| | |||| | Sbjct 24713 ATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGACT 24772 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||||| ||||| ||| | || | || |||||||| |||| || || Sbjct 24773 ACAACATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGTAT 24827 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || ||||| ||||| ||||||||| ||| ||| |||| Sbjct 25054 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 25113 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| |||||| ||||| || || | || ||||||| Sbjct 25114 GACACTATTGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAA 25173 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || || ||||||||||| || |||| | ||||||| ||| Sbjct 25174 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGATTACAAC 25233 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| ||||||||| | || | || || |||||| |||| || Sbjct 25234 ATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGG 25280 >seq2023 Length=11923 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || || || || ||||| ||||| || |||||| ||| ||| | Sbjct 3910 AAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAATC 3969 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || || | | | || |||| || ||| ||||| || || | || || Sbjct 3970 TTCTGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 4029 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| ||| | |||||||| || || ||||| |||||| || |||| | | || || Sbjct 4030 CCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTA 4089 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||| |||||||| | ||| | || ||||||||| |||| || Sbjct 4090 CAACATCCAAAAGGAATCTACCTTACACTTAGTCTTAAGATTAAGAGGTGG 4140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425391682908870