Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2332 273 3e-68 seq2193 156 6e-33 seq2023 150 3e-31 >seq2332 Length=8947 Score = 273 bits (302), Expect = 3e-68 Identities = 596/894 (67%), Gaps = 56/894 (6%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | || || || || || || || || | ||||| || | ||||||||||||| Sbjct 1301 ACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTTCCATAAAATCAAAT 1242 Query 17939 GGATTAGTGGTTTTATAATATT---TTTCTTGTATTA----ATTCGTATAATAATCTATC 17991 ||||| || | | ||| |||||| |||| || | |||||||||||| Sbjct 1241 GGATT-----TTGAACATTATAGACTTTCTT--ATTACCAAATGCAACTAATAATCTATC 1189 Query 17992 TGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGG 18051 || |||||||| |||||||| ||||||| | | |||||||||| || || | || Sbjct 1188 GGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAATAAACTAACTGG 1129 Query 18052 TAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTAC 18111 || |||||| | | | |||| || || || ||||| | || || || ||| || Sbjct 1128 TAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATAATCTTTTCGAC 1069 Query 18112 C----CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167 || ||| | | | ||| |||| || | | |||||||||| ||||||| Sbjct 1068 AATTTCTGGATCTGGTCTATTATTTAA-------ATGAGCAAATAATAAACAAGCAAAAT 1016 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATT- 18226 |||| ||||||||||||||||| | |||||||| || ||| ||||| || ||||| Sbjct 1015 CAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACCTGGCATNN 956 Query 18227 -----------------------ATACCTCttttttttAGCCAAAATATCGATGCGAAAC 18263 | ||||||||| |||| ||| || || ||||| || Sbjct 955 NNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGATGCAAATG 896 Query 18264 TACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT 18323 | | |||||| ||||| |||||| || || || | ||||||||||||| | | Sbjct 895 ATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGCATATAAGA 836 Query 18324 ATTTATTGCTCAGTA-TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATA 18382 | | | |||||| ||||| || |||||| || ||| ||||| || ||| Sbjct 835 CCTCAGTA-TCAGTAATCCATCTTAATGCCCAATCAGCTTTTCTTCTAATACATGGAATA 777 Query 18383 CTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATT 18442 || ||||||||||| || | ||| ||| || | ||| || |||||||| || ||| Sbjct 776 TGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGTATCAATT 717 Query 18443 AACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGAT 18502 || | ||||| |||| ||||| || |||| || || || |||| |||||| ||| Sbjct 716 AAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCATAAAATGAT 657 Query 18503 CTAGCCTCGGGATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTAT 18561 |||| || ||| ||||| || ||| ||||| |||| | ||||| |||||||| || Sbjct 656 TTAGCTTCAGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTAAATTTTCATTAACAAT 598 Query 18562 ACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT 18621 ||| |||| | || || ||||| || || |||||| | | |||||| ||| || Sbjct 597 ACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCATCATCATT 538 Query 18622 GAGATTGT---TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAA 18678 | || | |||| |||| || |||||| || ||||| |||||| | |||||||| Sbjct 537 TAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAGTCCAAAA 478 Query 18679 AGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 |||| ||| || | ||||| | || |||| || | || | || ||||| Sbjct 477 TGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAA 424 >seq2193 Length=52601 Score = 156 bits (172), Expect = 6e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || || ||||| || || ||||| |||||||| ||| ||| Sbjct 24597 AATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTC 24656 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| || || || |||||| |||||||| ||||| || |||||||| || Sbjct 24657 TGACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCA 24716 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||||| ||| |||||||| | ||||| ||||||||||| || || || Sbjct 24717 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGACTACAA 24776 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | |||||||| |||||||| ||||| ||| Sbjct 24777 CAT-TCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGGT 24825 Score = 149 bits (164), Expect = 9e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| || || ||||| |||||||| ||| |||| Sbjct 25054 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 25113 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || |||||| ||||| || ||||| || |||||||| ||| Sbjct 25114 GACACTATTGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAA 25173 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || |||||||| | ||||| ||||||||||| ||||| | Sbjct 25174 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGATTACA-- 25231 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || | |||||||| || ||||||||||| ||| Sbjct 25232 ACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 25281 >seq2023 Length=11923 Score = 150 bits (166), Expect = 3e-31 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || |||||||| |||||||| ||| | Sbjct 3911 AAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAATCT 3970 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || ||| || || ||||| || ||||| || || || || Sbjct 3971 TCTGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 4030 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | ||| |||||||| | |||||| ||||||||||| || || Sbjct 4031 CAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 4090 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || ||||| |||||||||||||| |||| Sbjct 4091 A--ACATCCAAAAGGAATCTACCTTACACTTAGTCTTAAGATTAAGAGGTGGTG 4142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731848854548000