Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2332 273 4e-68 seq2023 168 1e-36 seq2193 159 7e-34 >seq2332 Length=8947 Score = 273 bits (302), Expect = 4e-68 Identities = 576/865 (67%), Gaps = 38/865 (4%) Strand=Plus/Minus Query 49576 CTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTA 49635 ||||||| || | |||||||||||||||||||| |||||| ||| | | || Sbjct 1270 CTAATGAAATATTTTCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCT-TATTA 1212 Query 49636 TCAA-TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA 49694 ||| | || ||||||||||||||| ||||||||||||||||| |||| |||| || Sbjct 1211 CCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTG 1152 Query 49695 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctaca 49754 |||||||| ||||| ||| ||||||||||||| | | |||| ||||| || || || Sbjct 1151 TTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACT 1092 Query 49755 gcttgtttaattatcataattatattattttttga--taattta-tatttaatatgattc 49811 |||| ||| ||| | || | |||| | || | | || ||||||| |||| Sbjct 1091 GCTTCAACAATAATCTT--TTCGACAATTTCTGGATCTGGTCTATTATTTAA-ATGA--- 1038 Query 49812 gcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTA 49871 ||| ||| |||||| |||||||||||||||||||| || || ||| | || |||||||| Sbjct 1037 GCAAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTT 978 Query 49872 CTAAAAGTTAATCCTGGCATT------------------------AATCCTCTCTTTTTA 49907 ||||||||| |||||||| || ||||| || || Sbjct 977 GAAAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTT 918 Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967 | ||| || || |||||||| | | |||||| ||||| || || ||||| || Sbjct 917 AACCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCA 858 Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027 | || |||| | || | | | | | ||| ||||| ||| |||||||| ||| Sbjct 857 ACTAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCT 798 Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNN 50087 ||| || | ||| | || |||| ||| ||||| |||||||| | || ||| | Sbjct 797 TTTCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGA 738 Query 50088 NNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCT 50147 ||||| | ||||| |||| ||||| | | ||| || Sbjct 737 TCCTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATA 678 Query 50148 ATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCA 50207 ||||| || ||||||| | | ||||| | | |||||||| | | || |||| Sbjct 677 ATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCA 618 Query 50208 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA 50267 | |||||| ||| ||||||||||||||||| || ||||||||||| || ||| Sbjct 617 ATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATG 558 Query 50268 AAATGTTTTTCATTATCTTTTAAATTTTC---CCAAGATTCAAGATCGTTTGATAAATCT 50324 || | | |||||| ||| ||||| || || |||| | | ||| || |||||| Sbjct 557 AAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCA 498 Query 50325 ACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAA 50384 | |||||| ||||||||||||||| | | ||| || || | ||| | || ||| | Sbjct 497 ATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGA 438 Query 50385 TGTTCAATGGGAAATAGTACATATC 50409 | | ||| ||||| | ||| ||| Sbjct 437 TATCTAATTGGAAACATAACAAATC 413 >seq2023 Length=11923 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| ||||| ||||| |||| || || ||| || || ||||| Sbjct 4141 ACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 4082 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| |||| || ||||| |||||||||||||||||||| ||||| |||||||| Sbjct 4081 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 4022 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || ||| ||||| |||| || || ||||| || Sbjct 4021 AATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAAC 3962 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| || ||||||||||| || || | || || |||||||| Sbjct 3961 TTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911 >seq2193 Length=52601 Score = 159 bits (176), Expect = 7e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | ||| |||||||||||||| | || ||| || || || || || Sbjct 24827 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 24769 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| |||| | || |||||||| ||||||||||| || || | |||||||| || Sbjct 24768 GGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGG 24709 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| |||||| || ||||| |||| || || ||||| Sbjct 24708 AGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTC 24649 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| |||||||| ||||||||||| || || | || || |||||| Sbjct 24648 AACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAGATTTGCATT 24597 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || |||||||||||||||| || || ||| || ||||| || Sbjct 25281 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGA 25222 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || |||||||| |||||||| || || || | |||||||| || || Sbjct 25221 TAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 25162 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| |||||| || ||||| |||| || || ||||| || Sbjct 25161 AATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 25102 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| ||||||||||| || || | || || ||||| Sbjct 25101 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Score = 143 bits (158), Expect = 5e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | ||| |||||||||||||| | || ||| || || || || || Sbjct 25055 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 24997 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | || || ||||| |||||||| || || || | |||||||| || Sbjct 24996 AGACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGG 24937 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| |||||| ||| || ||| || | || || ||||| Sbjct 24936 AGGAATACCTTCCTTGTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTC 24877 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| ||||| ||||||||||| || || | || || ||||| Sbjct 24876 AACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984448087465500