Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 273 4e-68
seq2023 168 1e-36
seq2193 159 7e-34
>seq2332
Length=8947
Score = 273 bits (302), Expect = 4e-68
Identities = 576/865 (67%), Gaps = 38/865 (4%)
Strand=Plus/Minus
Query 49576 CTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTA 49635
||||||| || | |||||||||||||||||||| |||||| ||| | | ||
Sbjct 1270 CTAATGAAATATTTTCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCT-TATTA 1212
Query 49636 TCAA-TACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAA 49694
||| | || ||||||||||||||| ||||||||||||||||| |||| |||| ||
Sbjct 1211 CCAAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTG 1152
Query 49695 TTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctaca 49754
|||||||| ||||| ||| ||||||||||||| | | |||| ||||| || || ||
Sbjct 1151 TTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACT 1092
Query 49755 gcttgtttaattatcataattatattattttttga--taattta-tatttaatatgattc 49811
|||| ||| ||| | || | |||| | || | | || ||||||| ||||
Sbjct 1091 GCTTCAACAATAATCTT--TTCGACAATTTCTGGATCTGGTCTATTATTTAA-ATGA--- 1038
Query 49812 gcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTA 49871
||| ||| |||||| |||||||||||||||||||| || || ||| | || ||||||||
Sbjct 1037 GCAAATAATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTT 978
Query 49872 CTAAAAGTTAATCCTGGCATT------------------------AATCCTCTCTTTTTA 49907
||||||||| |||||||| || ||||| || ||
Sbjct 977 GAAAAAGTTAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTT 918
Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967
| ||| || || |||||||| | | |||||| ||||| || || ||||| ||
Sbjct 917 AACCAGAAAATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCA 858
Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027
| || |||| | || | | | | | ||| ||||| ||| |||||||| |||
Sbjct 857 ACTAATCTTTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCT 798
Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNN 50087
||| || | ||| | || |||| ||| ||||| |||||||| | || ||| |
Sbjct 797 TTTCTTCTAATACATGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGA 738
Query 50088 NNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCT 50147
||||| | ||||| |||| ||||| | | ||| ||
Sbjct 737 TCCTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATA 678
Query 50148 ATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCA 50207
||||| || ||||||| | | ||||| | | |||||||| | | || ||||
Sbjct 677 ATTTGGAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCA 618
Query 50208 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA 50267
| |||||| ||| ||||||||||||||||| || ||||||||||| || |||
Sbjct 617 ATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATG 558
Query 50268 AAATGTTTTTCATTATCTTTTAAATTTTC---CCAAGATTCAAGATCGTTTGATAAATCT 50324
|| | | |||||| ||| ||||| || || |||| | | ||| || ||||||
Sbjct 557 AAGTATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCA 498
Query 50325 ACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAA 50384
| |||||| ||||||||||||||| | | ||| || || | ||| | || ||| |
Sbjct 497 ATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGA 438
Query 50385 TGTTCAATGGGAAATAGTACATATC 50409
| | ||| ||||| | ||| |||
Sbjct 437 TATCTAATTGGAAACATAACAAATC 413
>seq2023
Length=11923
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | ||| ||||| ||||| |||| || || ||| || || |||||
Sbjct 4141 ACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 4082
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| |||| |||| || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 4081 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 4022
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| || ||||| || || ||| ||||| |||| || || ||||| ||
Sbjct 4021 AATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAAC 3962
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||||| ||||| || ||||||||||| || || | || || ||||||||
Sbjct 3961 TTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911
>seq2193
Length=52601
Score = 159 bits (176), Expect = 7e-34
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
||||||||||| | | ||| |||||||||||||| | || ||| || || || || ||
Sbjct 24827 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 24769
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||||| |||| | || |||||||| ||||||||||| || || | |||||||| ||
Sbjct 24768 GGATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGG 24709
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| |||||||| |||||| || ||||| |||| || || |||||
Sbjct 24708 AGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTC 24649
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||||| |||||||| ||||||||||| || || | || || ||||||
Sbjct 24648 AACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAGATTTGCATT 24597
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | || |||||||||||||||| || || ||| || ||||| ||
Sbjct 25281 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGA 25222
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||| |||| | || |||||||| |||||||| || || || | |||||||| || ||
Sbjct 25221 TAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 25162
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| || ||||| |||||| || ||||| |||| || || ||||| ||
Sbjct 25161 AATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 25102
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| |||||||| ||||||||||| || || | || || |||||
Sbjct 25101 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054
Score = 143 bits (158), Expect = 5e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
||||||||||| | | ||| |||||||||||||| | || ||| || || || || ||
Sbjct 25055 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 24997
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| || |||| | || || ||||| |||||||| || || || | |||||||| ||
Sbjct 24996 AGACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGG 24937
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || ||||| |||||| ||| || ||| || | || || |||||
Sbjct 24936 AGGAATACCTTCCTTGTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTC 24877
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||| ||||| ||||||||||| || || | || || |||||
Sbjct 24876 AACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984448087465500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |