Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2332 280 3e-70 seq2193 178 2e-39 seq2023 170 3e-37 >seq2332 Length=8947 Score = 280 bits (310), Expect = 3e-70 Identities = 602/910 (66%), Gaps = 40/910 (4%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || ||||||||| | ||||| |||||||| ||||| || ||||||| || Sbjct 1316 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 1257 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAA 38950 | |||||||||||||||||||| |||||| ||| | | || ||| | || ||| Sbjct 1256 TCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCT-TATTACCAAATGCAACTAA 1198 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||||||||| ||||||||||||||||| |||| |||| || |||||||| ||||| Sbjct 1197 TAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTCATACCTAATAA 1138 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 ||| ||||||||||||| | | |||| ||||| || || || |||| ||| || Sbjct 1137 ACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCTTCAACAATAAT 1078 Query 39071 cataattatattattttttga--taattta-tatttaatatgattcgcatataGTAAACA 39127 | | || | |||| | || | | || ||||||| |||| ||| ||| |||||| Sbjct 1077 CTT--TTCGACAATTTCTGGATCTGGTCTATTATTTAA-ATGA---GCAAATAATAAACA 1024 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||||| |||||||||||||| || ||| | || |||||||| ||||||||| || Sbjct 1023 AGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTTAAACC 964 Query 39188 TGGCATT------------------------AATCCTCTCTTTTTAAGCCAAAATATTGA 39223 |||||| || ||||| || || | ||| || || || Sbjct 963 TGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAAATAGA 904 Query 39224 TGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCC 39283 |||||| | | |||||| ||||| || || ||||| || | || |||| | | Sbjct 903 TGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTTTCAGC 844 Query 39284 AAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGA 39343 | | | | | | ||| |||||| ||| |||||||| |||||| || | ||| | Sbjct 843 ATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTTTCTTCTAATACA 784 Query 39344 AGGTATATTTTCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39403 || |||| ||| ||||| |||||||| | || Sbjct 783 TGGAATATGTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTAATATAAGT 724 Query 39404 NNNNNNNNNNNNAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATA 39463 ||||| |||| ||||| | | ||| || ||||| || ||| Sbjct 723 ATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGGAAACCATA 664 Query 39464 AAATTGCCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGA 39523 |||| | ||||| | | |||||||| | | || ||||| |||||| ||| Sbjct 663 AAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATT 604 Query 39524 TACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATT 39583 ||||||||||||||||| || ||||||||||| || ||| || | | |||||| Sbjct 603 AACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTATCTTTCATC 544 Query 39584 ATCTTTTAAATTTTC---CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGT 39640 ||| ||||| || || |||| | | ||| || |||||| | |||||| || Sbjct 543 ATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTCTTCAGCAGT 484 Query 39641 CCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAA- 39699 |||||| |||||| | | ||| || || | ||| | || ||| || | ||| |||| Sbjct 483 CCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAA 424 Query 39700 -ATAACACAT 39708 |||||| || Sbjct 423 CATAACAAAT 414 >seq2193 Length=52601 Score = 178 bits (196), Expect = 2e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| |||||||||||||| | || || ||| || || || Sbjct 24827 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 24768 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || |||| |||||||| |||||||||||||| || | ||||| || || Sbjct 24767 GATAAAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 24708 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| ||||| || || ||||| Sbjct 24707 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 24648 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| |||||||| ||||||||||| || || | ||| || |||||| Sbjct 24647 ACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAGATTTGCATT 24597 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || |||||||||||||||| || || || || ||||| || Sbjct 25281 ACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGA 25222 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || |||| |||||||| |||||||| ||||| || | ||||| || || || Sbjct 25221 TAAAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 25162 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| |||||| || ||||| ||||| || || ||||| || Sbjct 25161 AATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 25102 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| ||||||||||| || || | ||| || ||||| Sbjct 25101 TTCTAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| |||||||||||||| | || || ||| || || || Sbjct 25055 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA 24996 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| || ||||| |||||||| ||||| || | ||||| || || Sbjct 24995 GACAAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 24936 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| ||| || ||| || || || || ||||| Sbjct 24935 GGAATACCTTCCTTGTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCA 24876 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| ||||| ||||||||||| || || | ||| || ||||| Sbjct 24875 ACTTCTAAAGTGATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 >seq2023 Length=11923 Score = 170 bits (188), Expect = 3e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| ||||| ||||| |||| || || || || Sbjct 4149 TTCTTACCACCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTG 4090 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||||| || | || || ||||| ||||||||||| |||||||| |||||| Sbjct 4089 TAGTCAGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGG 4030 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || ||| ||||| ||||| || || Sbjct 4029 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAA 3970 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||| ||||| || ||||||||||| || || | ||| || |||||||| Sbjct 3969 GATTCAACTTCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905107375074000