Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq918 150 5e-31 seq2332 116 1e-20 seq2231 107 6e-18 seq1699 107 6e-18 seq750 107 6e-18 seq210 107 6e-18 seq1198 89.7 2e-12 seq2175 86.0 2e-11 >seq918 Length=18345 Score = 150 bits (166), Expect = 5e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| ||||| ||||| || || || |||||||| |||| || ||| || |||||| Sbjct 10239 TTACCACCTTGATCAACATAACGGGCGGTGTTATTGAAAACACGTACCATGGGGATAATA 10298 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || |||||||| || ||||| ||| ||||| | |||| || |||| |||||||||| Sbjct 10299 CCGTTGGAAGTACCGTTGGTACCGGCAATATATGCCCCAGTAGAACGAATATTATGAATA 10358 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 |||| ||||||||||| | | || ||||| ||| || || | ||||| | Sbjct 10359 TGTAAACCAATACCACCAGCACTCTTTGAAATCAAAGCACAAGTTTTCAAAGTATCATAG 10418 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || || ||||| |||||||||| ||| | | || | || ||| | ||| || | | Sbjct 10419 ATCCCATCAATTGAATCATCTTTCATAGCAACTAAGAAACATGAAGACATTTGTGGACTT 10478 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || || || || || |||| || |||| ||||| | ||| |||| | ||||| Sbjct 10479 GGAGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAAAACTTTTGTGACAT 10534 >seq2332 Length=8947 Score = 116 bits (128), Expect = 1e-20 Identities = 350/524 (67%), Gaps = 30/524 (6%) Strand=Plus/Plus Query 133072 TAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGC 133130 ||| ||||||||||| ||||||| | | || |||||||| | || || ||| ||| Sbjct 411 TAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAGAAAGCAG- 469 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 ||| | |||||||||| | ||| | |||||| ||||| | | ||| || Sbjct 470 AAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAAGATTTACATGATTGGAGAG 529 Query 133191 CCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGA 133247 | | || ||||||| | | || |||||| | ||||| || |||||||| Sbjct 530 ATAAATTAAATGATGATGAAAGATACTTCATTTCTCGAGTATTAGCATTCTTTGCTGCAT 589 Query 133248 GTGATGGTATTGTTCTTGAAAATTTA--GGAACACGGTTTATGGGAGAAGTTCAACTGGC 133305 ||||||||||||| |||||||||| ||| | ||| | |||||||||| | | Sbjct 590 CTGATGGTATTGTTAATGAAAATTTAATTGAAAA--TTTTTCAGCAGAAGTTCAAATTCC 647 Query 133306 CGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATA 133365 ||||| | |||||||| | || ||| ||| |||||||| ||||| || || Sbjct 648 TGAAGCTAAATCATTTTATGGTTTCCAAATTATGATTGAAAATATTCATTCAGAAACTTA 707 Query 133366 TTCTACTCTAATTGATACTTACATCAAAGATACCGTCCA---GAAGC--ACAAACTATTC 133420 ||| | ||||||||||||| || || || |||| ||||| | | |||| Sbjct 708 TTCCCTTTTAATTGATACTTATATTAAGGA-----TCCAAAGGAAGCTGATTACTTATTT 762 Query 133421 AACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAA-ATGGAT 133479 || || ||| | |||| ||||||| || ||| |||| ||||| ||||| |||||| Sbjct 763 AATGCTATTGAACATATTCCATGTATTAGAAGAAAAGCTGATTGGGC-ATTAAGATGGAT 821 Query 133480 CCAGGACA---AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGG 133536 || | || || | | |||| | | ||||| ||||||| || || || Sbjct 822 TACTGATACTGAG-GTCTTA--TATGCTGAAAGATTAGTTGCCTTTGCTGCCGTTGAAGG 878 Query 133537 CAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAA 133579 ||||| || ||||| | || ||| |||||||| ||| ||||| Sbjct 879 TATTTTCTTTAGTGGATCATT-TGCATCTATTTTCTGG-TTAAA 920 >seq2231 Length=145420 Score = 107 bits (118), Expect = 6e-18 Identities = 256/383 (67%), Gaps = 13/383 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| || |||| | ||||||| || || ||||| |||||||| || | Sbjct 126618 CTGTCAAATCTGCCAGGTCTCATTAATGCCTTATCCAACATATCAGCTCTGTTGGTGCCA 126559 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968 || || ||||| | || | | ||| |||||||| ||||| |||||| Sbjct 126558 GCTAAGACAACGACGTGATCACTGGTATCAAAACCATCCATCTCAACTAAAAGTTGATTC 126499 Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC---CGAATCGCTCCttt 289024 ||||| | || | ||||| || | ||| |||| || || || | ||| ||| Sbjct 126498 AAAGTGGTC--TCACGCTCATCGTTAGCACCACTTGCATTGCCTTTCGCA-CGCAGCTTC 126442 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 |||| |||||||| || |||| || | | | |||| ||||| | ||| Sbjct 126441 -----CCAATCGCATCAATCTCATCAACAAAGACAATTGAAGGAGCATTTTCACGAGCAG 126387 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 || ||||| || | |||||| ||||| || | ||| ||| |||||||||||||||||| Sbjct 126386 TTTTGAATAAGTCACGTACACGAGATGCACCCACACCCACAAACATTTCTACAAATTCAG 126327 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | || || || ||| | ||| |||||| || || ||||| || ||||| | Sbjct 126326 AACCAGAAACAGAAAAGAAAGGTACCCCTGCTTCACCAGCAGTGGCCCTGGCAAGAAGAG 126267 Query 289205 TCTTACCTGTTCCAGGTGGTCCC 289227 ||||||| ||||| || || ||| Sbjct 126266 TCTTACCAGTTCCTGGAGGACCC 126244 >seq1699 Length=19712 Score = 107 bits (118), Expect = 6e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| || ||| |||||||| ||| || || ||| || | |||||| ||| Sbjct 3394 AGAATTTCTTTAAGACGAGGAACACCCAAGGTAACATT---CTTCGAAGAAACACCGGCA 3338 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||| | ||| | |||||||| ||| ||||||||| ||| || |||| Sbjct 3337 TAATGGAAAGTATTTAAAGTCATTTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACA 3278 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 3277 ACACCAACCATTTCACCAGG 3258 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| || ||||||| | || | ||||||||| |||||||||||||| Sbjct 2636 ATCATAATGAACCATGATATCTTCCAAAGCTTTAACTAAACGACGTTGAATATAACCAGT 2577 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||| ||||| |||||||| ||||| | | |||| ||||||||||||| || Sbjct 2576 TTCAGCGGTTTTAACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 2517 Query 302673 TAGCTCTT 302680 | |||| Sbjct 2516 GAATTCTT 2509 >seq750 Length=34375 Score = 107 bits (118), Expect = 6e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| || ||| |||||||| ||| || || ||| || | |||||| ||| Sbjct 32848 AGAATTTCTTTAAGACGAGGAACACCCAAGGTAACATT---CTTCGAAGAAACACCGGCA 32792 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||| | ||| | |||||||| ||| ||||||||| ||| || |||| Sbjct 32791 TAATGGAAAGTATTTAAAGTCATTTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACA 32732 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 32731 ACACCAACCATTTCACCAGG 32712 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| || ||||||| | || | ||||||||| |||||||||||||| Sbjct 32090 ATCATAATGAACCATGATATCTTCCAAAGCTTTAACTAAACGACGTTGAATATAACCAGT 32031 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||| ||||| |||||||| ||||| | | |||| ||||||||||||| || Sbjct 32030 TTCAGCGGTTTTAACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 31971 Query 302673 TAGCTCTT 302680 | |||| Sbjct 31970 GAATTCTT 31963 >seq210 Length=5409 Score = 107 bits (118), Expect = 6e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| || ||| |||||||| ||| || || ||| || | |||||| ||| Sbjct 3394 AGAATTTCTTTAAGACGAGGAACACCCAAGGTAACATT---CTTCGAAGAAACACCGGCA 3338 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||| | ||| | |||||||| ||| ||||||||| ||| || |||| Sbjct 3337 TAATGGAAAGTATTTAAAGTCATTTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACA 3278 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 3277 ACACCAACCATTTCACCAGG 3258 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| || ||||||| | || | ||||||||| |||||||||||||| Sbjct 2636 ATCATAATGAACCATGATATCTTCCAAAGCTTTAACTAAACGACGTTGAATATAACCAGT 2577 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||| ||||| |||||||| ||||| | | |||| ||||||||||||| || Sbjct 2576 TTCAGCGGTTTTAACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCATGGAAAAA 2517 Query 302673 TAGCTCTT 302680 | |||| Sbjct 2516 GAATTCTT 2509 >seq1198 Length=4729 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 60203 CCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACA 60262 || ||||||| |||| ||| || ||||| ||||| ||||| |||||||| ||||||| | Sbjct 2723 CCATTTGGCTTTAATATATTGATATTGTTGGAGCCGACGAAGTTTTGAGCAAGACCAATA 2664 Query 60263 ATAGCACCATTTAA--ACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATC 60320 || | | | || | || |||||| ||||||||||| | || ||| || ||||| | Sbjct 2663 ATTGTCTGAATCAATGATTG--TTCACCATGATGATATCCGGTATTTTCAGATACATAAC 2606 Query 60321 CACTGAATTGTGCGACTTTAATTTC 60345 | ||||| || ||||| ||||| Sbjct 2605 CTGCCAATTGCGCTACTTTGATTTC 2581 >seq2175 Length=31899 Score = 86.0 bits (94), Expect = 2e-11 Identities = 215/325 (66%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| | |||||| ||||||||||| |||| ||| || | | |||| ||| | Sbjct 19505 CTTTCTCTACCAATGGCATCAATTTCATCAACGAATATAATGGAAGGAGCCATTTCACGA 19564 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | ||||| || | ||||| || || |||| || ||| ||||||| || ||| Sbjct 19565 GCTGTCTTGAATAAGTCACGAACACGAGAAGCACCAACCCCTACAAACATTTCCACGAAT 19624 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| |||| || | |||| ||| |||||| || ||| || | |||| | Sbjct 19625 TCTGAACCGGAGACACTCAAAAATGGAACACCTGCTTCACCAGCTGTGGCTTTTGCCAAA 19684 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 ||||| ||||| || |||||||| || ||| | | || | || | ||| || ||| Sbjct 19685 AGTGTTTTACCAGTACCAGGTGGACCAGATAAAATTGCACCTCTAGGAATTTTGGCTCCA 19744 Query 289261 GCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 || ||| ||||| | || || || || | |||| |||| | ||| | || Sbjct 19745 --AGCCTTTCGTATTTTTGTGGATCCTGCAAGAACTTGACAAATTCCATTATTTCTTCTT 19802 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 | | ||| ||||| || || ||||| Sbjct 19803 TAGACTCCTCACAACCGGCAACATC 19827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471769890112610