Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq2179 145 1e-29 seq330 87.8 2e-12 >seq2179 Length=11267 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 168549 GGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAATGGT 168608 ||||| |||||| | ||| |||| ||| | |||||| || ||||| | | ||||||| Sbjct 6591 GGTTCGACTGATGCCAAATTGTTAAGTGAAAAAGGTGTCAAGATTTGGGAGGGTAATGGT 6650 Query 168609 TCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGTCCA 168668 |||||||||| ||| || | || || || || | ||||||||||||||||||| Sbjct 6651 TCTCGTGAATATTTGGACAATTTGGGATTAACTGATCGTCGAGAAGGTGATTTAGGTCCA 6710 Query 168669 ATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGATTAC 168728 |||||||||| |||||||||||| || ||| | |||| || |||||||| ||||| Sbjct 6711 GTTTATGGATTCCAATGGAGACATTTTGGGGCTGAGTATAAGGATTGTGATACTGATTAT 6770 Query 168729 ACCGGACAAGGAGTAGACCAATT 168751 ||||| |||||| || ||||| Sbjct 6771 ACCGGTCAAGGATATGATCAATT 6793 >seq330 Length=28712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/252 (69%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 ||||| | || |||| ||||||||| | || ||||||||| |||||||||||| Sbjct 12254 ATTTTCTTTGGTCCAATTTATTATCAAAAATTGAAGCATATGGTTTTGGATAAAATGCAC 12313 Query 193854 GCTAGA---AGTCATGGACAAGTG-ACTACTTTACATCGACAACCAAATTGTGGTCGTTC 193909 || ||| || | || |||| | | || | || ||||||||| ||| | || Sbjct 12314 GCAAGAGCAAG--AGGGCCAAGAGCAGTATTAACCA--GACAACCAACCGAAGGTAGATC 12369 Query 193910 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGC 193969 || ||| ||||| ||||| ||||||||||| | ||| ||| || | | ||||||| Sbjct 12370 AAGAGATGGTGGTTTGAGATTGGGAGAAATGGAAAGAGATTGTGTTATCGCATATGGTGC 12429 Query 193970 TACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 194029 ||||||| || |||||| | | | | |||||| | ||| |||| ||| |||| Sbjct 12430 GTCTCAATTGTTATTGGAAAGATTAATGATATCATCTGATGCATTTGAAGTTGATATTTG 12489 Query 194030 CACAGAATGTGG 194041 | ||||||| Sbjct 12490 TAATAAATGTGG 12501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635157512508400