Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq2193 113 4e-20
seq2332 84.2 2e-11
>seq2193
Length=52601
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || ||||| || || | ||||| | ||||| ||| |
Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || ||| |||||| || || || ||||| || || |||||
Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 24945
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | |||| || || || ||| | ||||| | ||||| | | || |||||
Sbjct 24946 CAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAAC 25005
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|||||||| |||||||| | |||||||| |||||||||||||| ||
Sbjct 25006 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGG 25052
Score = 104 bits (114), Expect = 2e-17
Identities = 178/258 (69%), Gaps = 9/258 (3%)
Strand=Plus/Plus
Query 25144 AAATTATATAAGTAGTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203
||||||||||| || || ||||| ||||| | || || || || ||||| ||
Sbjct 24576 AAATTATATAACTACATT-------AACAA--TGCAAATCTTCGTCAAGACTTTAACTGG 24626
Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263
|| | || || | ||||| ||| | || ||||| || | || || |||||
Sbjct 24627 TAAGACCATTACCTTAGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCTAAAAT 24686
Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323
||||| || ||||| || || ||||| ||| | | |||| | || || ||| |
Sbjct 24687 CCAAGATAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATTTTTGCTGGTAAGCAATT 24746
Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383
||||| | ||||| | | ||| ||||| |||||||| |||||||| | ||||||||
Sbjct 24747 GGAAGACGGTAGAACTTTATCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGT 24806
Query 25384 GTTAAGATTGAGAGGAGG 25401
|||||||||||||| ||
Sbjct 24807 TTTAAGATTGAGAGGTGG 24824
>seq2332
Length=8947
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 110051 TTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAAGGATTG 110110
||||| ||||| |||||||| || | | || ||||| | |||||| || || |||||
Sbjct 1295 TTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT 1236
Query 110111 ACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCACAAATTCA 110170
| ||| || ||| | | || ||| | | || |||| ||| || |||||||||
Sbjct 1235 TGAACATTATAGACTTTCTTATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCA 1176
Query 110171 ATATACTCGCACATGGACTGTAC-GTTCATGCCTAACATGGCAACTGGTAGAGCGGTAGT 110229
| ||| | ||||| | | ||| |||||| ||||| | |||||||| || |||
Sbjct 1175 ACATATTGACACATCAATT-TACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGT 1117
Query 110230 aaaaaaaTCCTTTTCAATGTCGACAGCCTCTAC 110262
||| | ||||||||||| || || || || ||
Sbjct 1116 GAAATATTCCTTTTCAATATCAACTGCTTCAAC 1084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445080323889600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |