Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2193 113 4e-20 seq2332 84.2 2e-11 >seq2193 Length=52601 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || ||||| || || | ||||| | ||||| ||| | Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| |||||| || || || ||||| || || ||||| Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 24945 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || || ||| | ||||| | ||||| | | || ||||| Sbjct 24946 CAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAAC 25005 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| | |||||||| |||||||||||||| || Sbjct 25006 ATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGG 25052 Score = 104 bits (114), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 25144 AAATTATATAAGTAGTTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGG 25203 ||||||||||| || || ||||| ||||| | || || || || ||||| || Sbjct 24576 AAATTATATAACTACATT-------AACAA--TGCAAATCTTCGTCAAGACTTTAACTGG 24626 Query 25204 AAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAAT 25263 || | || || | ||||| ||| | || ||||| || | || || ||||| Sbjct 24627 TAAGACCATTACCTTAGAAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCTAAAAT 24686 Query 25264 TACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACT 25323 ||||| || ||||| || || ||||| ||| | | |||| | || || ||| | Sbjct 24687 CCAAGATAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATTTTTGCTGGTAAGCAATT 24746 Query 25324 CGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| | ||||| | | ||| ||||| |||||||| |||||||| | |||||||| Sbjct 24747 GGAAGACGGTAGAACTTTATCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGT 24806 Query 25384 GTTAAGATTGAGAGGAGG 25401 |||||||||||||| || Sbjct 24807 TTTAAGATTGAGAGGTGG 24824 >seq2332 Length=8947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 110051 TTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAAGGATTG 110110 ||||| ||||| |||||||| || | | || ||||| | |||||| || || ||||| Sbjct 1295 TTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTTCCATAAAATCAAATGGATTT 1236 Query 110111 ACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCACAAATTCA 110170 | ||| || ||| | | || ||| | | || |||| ||| || ||||||||| Sbjct 1235 TGAACATTATAGACTTTCTTATTACCAAATGCAACTAATAATCTATCGGCAACAAATTCA 1176 Query 110171 ATATACTCGCACATGGACTGTAC-GTTCATGCCTAACATGGCAACTGGTAGAGCGGTAGT 110229 | ||| | ||||| | | ||| |||||| ||||| | |||||||| || ||| Sbjct 1175 ACATATTGACACATCAATT-TACTGTTCATACCTAATAAACTAACTGGTAATGCATCAGT 1117 Query 110230 aaaaaaaTCCTTTTCAATGTCGACAGCCTCTAC 110262 ||| | ||||||||||| || || || || || Sbjct 1116 GAAATATTCCTTTTCAATATCAACTGCTTCAAC 1084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080323889600