Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2332 311 7e-80
seq2006 141 7e-29
>seq2332
Length=8947
Score = 311 bits (344), Expect = 7e-80
Identities = 627/925 (68%), Gaps = 49/925 (5%)
Strand=Plus/Plus
Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744
|||||||| ||| ||||| ||||||||||| ||||||||| || |||||| | |||
Sbjct 400 GAAAATCCTCGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTAC 459
Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804
|| |||||| | || ||||||||||| || |||||| ||||||| | |||||| |||
Sbjct 460 AAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAAGATTTACAT 519
Query 43805 CATTGGA---TTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861
|||||| | |||||| | |||| | | || || ||| || || || ||
Sbjct 520 GATTGGAGAGATAAATTAAATGATGATGAAAGATACTTCATTTCTCGAGTATTAGCATTC 579
Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921
|||||||| || || || || ||||||||||| || ||| | |||||||
Sbjct 580 TTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTT 639
Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981
||| | || ||||| || |||||||| || |||||| || ||||||||||||||
Sbjct 640 CAAATTCCTGAAGCTAAATCATTTTATGGTTTCCAAATTATGATTGAAAATATTCATTCA 699
Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGAT 44039
|||| || ||| | || ||||| || || || ||| || ||||| || |
Sbjct 700 GAAACTTATTCCCTTTTAATTGATACTTATATTAAGGAT--CCAAAGGAAGCTGATTACT 757
Query 44040 TGTTTAATGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098
| |||||||| || ||| | | | | || |||| | ||||| || ||||| | | |
Sbjct 758 TATTTAATGCTATTGAACATATTCCATG-TATTAGAAGAAAAGCTGATTGGGCATTAAGA 816
Query 44099 TGGATAAATTCAAATGA-TTCT--TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155
||||| | | | ||| ||| | || ||| || | || || ||||| | || |||
Sbjct 817 TGGATTACTGATACTGAGGTCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCCGTTGAA 876
Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG--- 44212
|| ||||||||| ||||| ||||| | || || |||||||||||| ||||||||
Sbjct 877 GGTATTTTCTTTAGTGGATCATTTGCATCTATTTTCTGGTTAAAGAAAAGAGGTTTGATG 936
Query 44213 ---------------------ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251
||||| || || || ||||||||||| ||||| || |
Sbjct 937 CNNNNNNNNNNNNNNNNNNNNATGCCAGGTTTAACTTTTTCAAATGAATTAATTTGTAGA 996
Query 44252 GATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAG 44311
|||||||| |||||| ||||||||||| || ||| ||| || || | | ||
Sbjct 997 GATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTTGCTCATTTA----AATAATAG 1052
Query 44312 CCTTCATGTAAGACAATTAC--AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAAT 44369
| || ||| | | | | | ||| |||| || ||||| | || ||| | ||||
Sbjct 1053 ACCAGAT-CCAGAAATTGTCGAAAAGATTATTGTTGAAGCAGTTGATATTGAAAAGGAAT 1111
Query 44370 TTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA---TGAACTTTTGATGAACC 44426
| | || |||||||| || | |||| |||| ||||| | || |||||| |
Sbjct 1112 ATTTCACTGATGCATTACCAGTTAGTTTATTAGGTATGAACAGTAAA---TTGATGTGTC 1168
Query 44427 AATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATA 44486
||||| |||||| |||| ||| | ||| | | | | | ||| | ||| |||||
Sbjct 1169 AATATGTTGAATTTGTTGCCGATAGATTATTAGTTGCATTTGGTAATAAGAAAGTCTATA 1228
Query 44487 TTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTT 44546
||| ||||| || ||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1229 ATGTTCAAAATCCATTTGATTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTT 1288
Query 44547 TTGAAAAACGCGTTGGAGAATATCA 44571
||||||| | ||| || |||||
Sbjct 1289 TTGAAAAGAGAGTTTCTGATTATCA 1313
>seq2006
Length=3261
Score = 141 bits (156), Expect = 7e-29
Identities = 284/418 (68%), Gaps = 21/418 (5%)
Strand=Plus/Plus
Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA-- 19419
||| || || ||| ||| ||||| |||||||| | || | ||| | ||||
Sbjct 1344 TGGTCCTCCTGGTACTGGTAAAACCTTAATTGCCCGTAAATTATCCAAAATGCTTAATGG 1403
Query 19420 -AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478
||| ||||| || ||||| || ||||||||||| || | ||||||||| ||| ||
Sbjct 1404 TAAAGAACCT---AAGATTGTCAACGGTCCTGAAATGTTGAGTAAATATGTTGGTGCTTC 1460
Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538
||||||||| | || ||| || || || ||| ||| | |||| |||| |
Sbjct 1461 AGAAGAAAATATTCGTAATTTATTCAAAGATGCAGAAACCGAATACAAACAAA-AGGGAG 1519
Query 19539 CAAAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595
| | |||| || ||| | || || | ||||||||||| | ||| ||| |||||
Sbjct 1520 AAGA--TTCTGATTTACACGTGATTATTTTTGATGAATTGGATTCTGTCTTTAAACAAAG 1577
Query 19596 AGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646
||| || | || | ||| || ||||| ||||||||| ||| | | ||
Sbjct 1578 AGGATCAGCCAAATCGGATGGTACTGGTGTTGGTGACAATGTTGTCAACCAATTATTATC 1637
Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706
|| | ||||||||| | ||| ||||||||||||| |||||||| ||||||||| | |
Sbjct 1638 CAAGATGGACGGTGTTGATCAATTGAATAATATTTTGGTTATTGGGATGACTAATCGTTT 1697
Query 19707 GGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764
|| ||||| || | || ||||| |||| ||| | || ||||| | || ||||||
Sbjct 1698 AGATTTAATTGATACTGCATTATTGAGACCAGGTAGATTTGAAATTCAAATTGAAATT 1755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397443744692650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |