Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2332 311 7e-80 seq2006 141 7e-29 >seq2332 Length=8947 Score = 311 bits (344), Expect = 7e-80 Identities = 627/925 (68%), Gaps = 49/925 (5%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| ||| ||||| ||||||||||| ||||||||| || |||||| | ||| Sbjct 400 GAAAATCCTCGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTAC 459 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || |||||| | || ||||||||||| || |||||| ||||||| | |||||| ||| Sbjct 460 AAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAAGATTTACAT 519 Query 43805 CATTGGA---TTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 |||||| | |||||| | |||| | | || || ||| || || || || Sbjct 520 GATTGGAGAGATAAATTAAATGATGATGAAAGATACTTCATTTCTCGAGTATTAGCATTC 579 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921 |||||||| || || || || ||||||||||| || ||| | ||||||| Sbjct 580 TTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTT 639 Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981 ||| | || ||||| || |||||||| || |||||| || |||||||||||||| Sbjct 640 CAAATTCCTGAAGCTAAATCATTTTATGGTTTCCAAATTATGATTGAAAATATTCATTCA 699 Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGAT 44039 |||| || ||| | || ||||| || || || ||| || ||||| || | Sbjct 700 GAAACTTATTCCCTTTTAATTGATACTTATATTAAGGAT--CCAAAGGAAGCTGATTACT 757 Query 44040 TGTTTAATGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 | |||||||| || ||| | | | | || |||| | ||||| || ||||| | | | Sbjct 758 TATTTAATGCTATTGAACATATTCCATG-TATTAGAAGAAAAGCTGATTGGGCATTAAGA 816 Query 44099 TGGATAAATTCAAATGA-TTCT--TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | | | ||| ||| | || ||| || | || || ||||| | || ||| Sbjct 817 TGGATTACTGATACTGAGGTCTTATATGCTGAAAGATTAGTTGCCTTTGCTGCCGTTGAA 876 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG--- 44212 || ||||||||| ||||| ||||| | || || |||||||||||| |||||||| Sbjct 877 GGTATTTTCTTTAGTGGATCATTTGCATCTATTTTCTGGTTAAAGAAAAGAGGTTTGATG 936 Query 44213 ---------------------ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251 ||||| || || || ||||||||||| ||||| || | Sbjct 937 CNNNNNNNNNNNNNNNNNNNNATGCCAGGTTTAACTTTTTCAAATGAATTAATTTGTAGA 996 Query 44252 GATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAG 44311 |||||||| |||||| ||||||||||| || ||| ||| || || | | || Sbjct 997 GATGAAGGTTTACATACTGATTTTGCTTGTTTATTATTTGCTCATTTA----AATAATAG 1052 Query 44312 CCTTCATGTAAGACAATTAC--AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAAT 44369 | || ||| | | | | | ||| |||| || ||||| | || ||| | |||| Sbjct 1053 ACCAGAT-CCAGAAATTGTCGAAAAGATTATTGTTGAAGCAGTTGATATTGAAAAGGAAT 1111 Query 44370 TTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA---TGAACTTTTGATGAACC 44426 | | || |||||||| || | |||| |||| ||||| | || |||||| | Sbjct 1112 ATTTCACTGATGCATTACCAGTTAGTTTATTAGGTATGAACAGTAAA---TTGATGTGTC 1168 Query 44427 AATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATA 44486 ||||| |||||| |||| ||| | ||| | | | | | ||| | ||| ||||| Sbjct 1169 AATATGTTGAATTTGTTGCCGATAGATTATTAGTTGCATTTGGTAATAAGAAAGTCTATA 1228 Query 44487 TTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTT 44546 ||| ||||| || ||||||||||||||||||||||| || | || ||||| ||||||| Sbjct 1229 ATGTTCAAAATCCATTTGATTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTT 1288 Query 44547 TTGAAAAACGCGTTGGAGAATATCA 44571 ||||||| | ||| || ||||| Sbjct 1289 TTGAAAAGAGAGTTTCTGATTATCA 1313 >seq2006 Length=3261 Score = 141 bits (156), Expect = 7e-29 Identities = 284/418 (68%), Gaps = 21/418 (5%) Strand=Plus/Plus Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA-- 19419 ||| || || ||| ||| ||||| |||||||| | || | ||| | |||| Sbjct 1344 TGGTCCTCCTGGTACTGGTAAAACCTTAATTGCCCGTAAATTATCCAAAATGCTTAATGG 1403 Query 19420 -AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| ||||| || ||||| || ||||||||||| || | ||||||||| ||| || Sbjct 1404 TAAAGAACCT---AAGATTGTCAACGGTCCTGAAATGTTGAGTAAATATGTTGGTGCTTC 1460 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 ||||||||| | || ||| || || || ||| ||| | |||| |||| | Sbjct 1461 AGAAGAAAATATTCGTAATTTATTCAAAGATGCAGAAACCGAATACAAACAAA-AGGGAG 1519 Query 19539 CAAAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 | | |||| || ||| | || || | ||||||||||| | ||| ||| ||||| Sbjct 1520 AAGA--TTCTGATTTACACGTGATTATTTTTGATGAATTGGATTCTGTCTTTAAACAAAG 1577 Query 19596 AGGTTCTGG---------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646 ||| || | || | ||| || ||||| ||||||||| ||| | | || Sbjct 1578 AGGATCAGCCAAATCGGATGGTACTGGTGTTGGTGACAATGTTGTCAACCAATTATTATC 1637 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706 || | ||||||||| | ||| ||||||||||||| |||||||| ||||||||| | | Sbjct 1638 CAAGATGGACGGTGTTGATCAATTGAATAATATTTTGGTTATTGGGATGACTAATCGTTT 1697 Query 19707 GGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 || ||||| || | || ||||| |||| ||| | || ||||| | || |||||| Sbjct 1698 AGATTTAATTGATACTGCATTATTGAGACCAGGTAGATTTGAAATTCAAATTGAAATT 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443744692650