Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq918 158 2e-33 seq1950 98.7 1e-15 seq2231 95.1 2e-14 >seq918 Length=18345 Score = 158 bits (174), Expect = 2e-33 Identities = 477/727 (66%), Gaps = 16/727 (2%) Strand=Plus/Plus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 || ||||| || || |||||| || ||||||| || |||||||| || |||||| Sbjct 9201 AATTCACCAGCAAGAACTCTTCTTGAATAAATGTTTGAAGTATATGGTTCGAAACATTCA 9260 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 |||||||| |||||||||| || || || |||||||| || || | |||||| || Sbjct 9261 TTATTACCTAAGATTTGTGATGTTGAAGCAGTTGGCATAGGGGCAACTAAAAGAGAATTT 9320 Query 110801 CGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCTT 110856 | | || | | ||| ||| || ||| | |||||| || || || || || Sbjct 9321 CTTAATCCATGTT--TTGCCATGTTTTGCTTTAAGGTATCCCAATCCCATAATTCAG-TT 9377 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 ||||| |||| | | ||| | || | | || || || || || ||||| | | Sbjct 9378 GGTTTTCTATTCC-ATAAATCATATTGTAATAAACCCTGAGATGCAGGTGAACCTGGATA 9436 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 110976 | |||||| | ||||| ||| || |||||| | |||| || || ||||| Sbjct 9437 AGATTCATAAGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCCACGGCAGCATGATA 9496 Query 110977 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCG 111036 || ||||||||||| || ||| | || ||||||| | |||||||||| | | Sbjct 9497 AATAGTTTCAAAGATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGGTAATCT 9556 Query 111037 GCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCAT 111096 | || ||| |||| || | |||||| || ||||| |||| ||||| | | ||| Sbjct 9557 TAATGCCATGAATGCATCAGCCAAACCTTGTACCCCCAAGGCAATTGGTCTATTTTTCAT 9616 Query 111097 ATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 111155 || || || || ||| ||| |||||| | || | ||||| ||| |||| || Sbjct 9617 GTTGGAAGTTTTGGCT-TCTGGAACTGGATAATAGTTACGATCAATAACTTTATTTAAAT 9675 Query 111156 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT-----CAAAAGTGCGAGT 111210 | ||||||||||| || |||||||| | ||| ||| ||| || | || | Sbjct 9676 TACGAGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCAT 9735 Query 111211 C-TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | |||| | ||| | ||| | ||| ||||| || || || |||||||| || | Sbjct 9736 CATCTTTTTCAACAAATGATGGTAAGGCAATTGAAGCTAAGTTACAAACAGCAACTTCTT 9795 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | || || || | |||||| |||||| ||||| ||||| | || |||| Sbjct 9796 CAGGTGATGAATATTCAACAATTTCACAACATAAATTGGATGATTTAATAATACCTAAAT 9855 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||||||| || |||| | ||| || ||||| || || | ||| | || || || || | Sbjct 9856 TCTTTTGATTGGTCTTTTGGTTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTT 9915 Query 111390 CCGTCTG 111396 | || || Sbjct 9916 CAGTTTG 9922 >seq1950 Length=3064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| |||||||| || || || || | ||||| |||||||||||| |||||| Sbjct 500 TATGGCCGTGTTGCTCCTCGTTCTGGATTAGCTGTCAAGCATGGTATTTCTACTGGTGCT 559 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 || ||||||||| | || |||| ||||||||| ||||| || | || ||||| | || Sbjct 560 GGAGTTATTGATGCTGATTATAGAGGTGAAGTTAAAGTTGTATTATTTAATCATAGTGAT 619 Query 164724 AAAGACTTTGAGGTAAA 164740 ||||| ||||| || || Sbjct 620 AAAGATTTTGAAGTTAA 636 >seq2231 Length=145420 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 |||| || | ||||||||||||||||| |||||||| | || |||||| || || Sbjct 126446 GCTTCCCAATCGCATCAATCTCATCAACAAAGACAATTGAAGGAGCATTTTCACGAGCAG 126387 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 ||| || | || || || | ||||||||||| |||||||| || ||||| | | Sbjct 126386 TTTTGAATAAGTCACGTACACGAGATGCACCCACACCCACAAACATTTCTACAAATTCAG 126327 Query 11739 CGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 |||| || | | ||| || || || |||||| || |||| | ||| || || Sbjct 126326 AACCAGA-AACAGAAAAGAAAGGTACCCCTGCTTCACCAGCAGTGGCCCTGGCAAGAAGA 126268 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || || ||||| ||||| |||| || |||| ||||| || ||||| Sbjct 126267 GTCTTACCAGTTCCTGGAGGACCCGAAAGAATTGCCCCTCTAGGGATTTTCGCACC 126212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012138488000