Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq918 136 5e-27 seq2231 109 6e-19 seq2175 87.8 2e-12 >seq918 Length=18345 Score = 136 bits (150), Expect = 5e-27 Identities = 886/1411 (63%), Gaps = 29/1411 (2%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGT--TCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| ||||| |||| | ||||| | |||||||| ||||||||||| | || || Sbjct 10618 GAAAGACCACA--ACATTTAATCATGAGAGTGGCCATTGGTATTCATGGTAATGATATCC 10561 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 104333 | || | || | || | | |||||| ||| | |||| ||| | |||||| Sbjct 10560 CTCGAGTTATTGAATCTTATAATATGATGTCACAAAAGTTTTTCACTCATGGTTCACCAA 10501 Query 104334 CCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACA 104393 | | || ||||| ||||| ||||| || |||||||| || ||| | | || | | Sbjct 10500 CTTTATTTAATGCCGGTACTCCAAGTCCACAAATGTCTTCATGTTTCTTAGTTGCTATGA 10441 Query 104394 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 104453 | || || ||||| | || ||||||| ||| | | ||||| || |||||| Sbjct 10440 AAGATGATTCAATTGATGGGATCTATGATACTTTGAAAACTTGTGCTTTGATTTCAAAGA 10381 Query 104454 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 | ||||| |||||||| | || || ||| || | | | | | | |||| | Sbjct 10380 GTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGCATATATTGCCG 10321 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || ||| || | |||||||| || ||| | || || || || ||| || | Sbjct 10320 GTACCAACGGTACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAATAACACCGCCC 10261 Query 104574 GCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | ||||| |||||| ||| | || ||| | | || | ||| | || |||| Sbjct 10260 GTTATGTTGATCAAGGTGGTAATAAGAGACCAGGAGCATTTGCCCTTTATTTAGAACCAT 10201 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| | ||||| | || || |||| | | || |||||| | || || Sbjct 10200 GGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAAGAAGAAATTA 10141 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | | ||| | ||| | || | |||||||| ||| | || ||||||||||| || Sbjct 10140 GAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAGAGAGTGGAAC 10081 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 | | ||| ||||| | | |||| || | | || ||||| | | |||| | Sbjct 10080 AAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGGTTACCTGATGTTTATG 10021 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 |||| || |||||| | || ||| || || |||||||| | | || Sbjct 10020 GTGATGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGTAGACAAACCA 9961 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | | ||| | | || | | | ||||| || |||||||| |||| Sbjct 9960 TTAAGGCACAAAAATTATGGTATTCCATCTTGGAAGCCCAAACTGAAACTGGTACTCCAT 9901 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||| | || ||||| || ||||||||||||| |||||||||||||| ||| | || | Sbjct 9900 TTATGTTATATAAAGATGCTTGTAACCAAAAGACCAATCAAAAGAATTTAGGTATTATTA 9841 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 | |||||| | ||| ||||| | |||| | || || || ||||| | Sbjct 9840 AATCATCCAATTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAAGTTGCTGTTT 9781 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-CATT---- 105105 ||||| | || ||||| || | || | ||| || | ||| | || |||| Sbjct 9780 GTAACTTAGCTTCAATTGCCTTACCATCATTTGTTGA--AAAAGATGATGATCATTCATG 9723 Query 105106 ---TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | ||| ||| ||| | || ||| |||| || | ||| || || |||| | ||| Sbjct 9722 GTATAATTTTGATAAATTACATGAAATTACCAAGATTGTTACTCGTAATTTAAATAAAGT 9663 Query 105163 TATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 ||||||| | || | ||| || ||| ||| || | || || |||| | | | | Sbjct 9662 TATTGATCGTAACTATTATCCAGTTCCAGA-AGCCAAAACTTCCAACATGAAAAATAGAC 9604 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTT 105280 |||||| | || || || ||| | || |||| |||||| | || || ||||| Sbjct 9603 CAATTGCCTTGGGGGTACAAGGTTTGGCTGATGCATTCATGGCATTAAGATTAC-CATTT 9545 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 ||||| | ||||| | ||| | ||| | || ||||| || || ||||| || || Sbjct 9544 GATTCTCAAGAAGCCAGAGAATTAAATATTCAAATCTTTGAAACTATTTATCATGCTGCC 9485 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 | || | | || || || | | || ||||| |||||| | | | ||||| Sbjct 9484 GTGGAAACTTCTATTGAATTAGCCCAAGAAGAAGGTCCTTATGAATCTTATCCAGGTTCA 9425 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA- 105459 || || || || || | | |||| |||| | | |||| | ||||| || | || Sbjct 9424 CCTGCATCTCAGGGTTTATTACAATATGATTTAT-GGAATAGAAAACCAA-CTGAATTAT 9367 Query 105460 -CGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 || ||||| | | ||| || ||| ||| | | || | | || ||| | Sbjct 9366 GGGATTGGGATACCTTAAAGCAAAACATGGCAA--AACATGGATTAAGAAATTCTCTTTT 9309 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | || || |||||||| || || || |||||||||| |||||||||||||| || || Sbjct 9308 AGTTGCCCCTATGCCAACTGCTTCAACATCACAAATCTTAGGTAATAATGAATGTTTCGA 9249 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGA 105607 ||| || || | ||||| ||| |||||| Sbjct 9248 ACCATATACTTCAAACATTTATTCAAGAAGA 9218 >seq2231 Length=145420 Score = 109 bits (120), Expect = 6e-19 Identities = 220/328 (67%), Gaps = 15/328 (5%) Strand=Plus/Minus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 ||||||||||||||||||| |||||||| || | ||| || || ||||| || | Sbjct 126533 TATCAAAACCATCCATCTCAACTAAAAGTTGATTCAAAGTGGTCTCACGCTCATCGTTAG 126474 Query 9669 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 9719 | ||||| ||| ||| || |||| || | |||||||||||||||| Sbjct 126473 C------ACCACTTGCATTGCCTTTCGCACGCAGCTTCCCAATCGCATCAATCTCATCAA 126420 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779 ||||| || | || |||||| ||||| || || | || |||||||| | Sbjct 126419 CAAAGACAATTGAAGGAGCATTTTCACGAGCAGTTTTGAATAAGTCACGTACACGAGATG 126360 Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACAT 9839 | |||||||| |||||||| || ||||| | | | ||| | ||| || || Sbjct 126359 CACCCACACCCACAAACATTTCTACAAATTCAGAACCAGAAACAGAAAAGAAAGGTACCC 126300 Query 9840 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGA 9899 | |||||| ||| |||| | ||| |||||||||||||| || ||||| ||||| | Sbjct 126299 CTGCTTCACCAGCAGTGGCCCTGGCAAGAAGAGTCTTACCAGTTCCTGGAGGACCCGAAA 126240 Query 9900 GGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | | || |||| || || || || || Sbjct 126239 GAATTGCCCCTCTAGGGATTTTCGCACC 126212 >seq2175 Length=31899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 268/407 (66%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| | ||| | ||| | || | |||||| ||||| || | || Sbjct 19342 ATCAAATCTTCCTGGTCTAAGCAACGCCTTGTCCAAAATATCAGGACGATTAGTACCTGC 19401 Query 9586 GATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | ||||||| | || | | ||||||||||||||| || ||| | |||||| Sbjct 19402 CAAAACAACAACA--TGATCACCCGAATCAAAACCATCCATTTCAACCAACAATTGGTTC 19459 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || | ||| ||||| ||||| || || | ||| || | || | || | | Sbjct 19460 AATGTATTTTCACGTTCGTCATTTCCTCCAATTCTTCCATTACCTCTTTCTCTACCAATG 19519 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 9762 |||||||| ||||||| ||| | ||| | || |||| ||||| | ||| || || Sbjct 19520 GCATCAATTTCATCAACGAATATAATGGAAGGAGCCATTTCACGAGCTGTCTTGAATAAG 19579 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 || || ||||| || || || || |||||||| ||||| || | || |||| || Sbjct 19580 -TCACGAACACGAGAAGCACCAACCCCTACAAACATTTCCACGAATTCTGAACCGGAGAC 19638 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | | || || ||| | |||||| || ||||| || | ||| || ||||| | Sbjct 19639 ACT-CAAAAATGGAACACCTGCTTCACCAGCTGTGGCTTTTGCCAAAAGTGTTTTACCAG 19697 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 |||| || ||| | | | ||||||| ||||| ||||| ||| Sbjct 19698 TACCAGGTGGACCAGATAAAATTGCACCTCTAGGAATTTTGGCTCCA 19744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242354377200