Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2023 129 1e-24 seq2193 123 6e-23 >seq2023 Length=11923 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | || || || ||||||||||| || || | | || || || Sbjct 4129 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 4070 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| || || ||||| | | |||||||||||| |||| |||||||| Sbjct 4069 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4010 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| ||| || || || || |||||||| |||||| || | || || Sbjct 4009 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 3950 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| || || | |||||||| Sbjct 3949 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911 >seq2193 Length=52601 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || | |||||| || ||||| ||||| || || | | || || || Sbjct 25041 TCTTAAAACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 24982 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | ||||| || ||||| || | |||||||| || ||||||| |||||||| Sbjct 24981 GTCTTCTAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 24922 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || ||| ||||| ||||| |||||||| |||||| || | |||||| Sbjct 24921 GTCTTGAATTTTAGATTTAACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGAT 24862 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 24861 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 24826 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | || | ||| || || ||||||||||| ||||| | | || || || Sbjct 25269 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACC 25210 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || ||||| || | |||||||| || ||||||| |||||||| Sbjct 25209 GTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 25150 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || || || || |||||||| |||||| || | || || Sbjct 25149 GTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 25090 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 25089 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159114425363450