Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2193 152 3e-32 >seq2193 Length=52601 Score = 152 bits (168), Expect = 3e-32 Identities = 182/242 (75%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 23599 TAATTAC-TTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 ||| ||| |||| |||||| || ||||| || || | || || || || || || | | Sbjct 24584 TAACTACATTAACAATGCAAATCTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAG 24643 Query 23657 AAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 ||||||| || | |||||| |||| ||| | || | |||| | || || |||||| Sbjct 24644 AAGTTGAATCTTCTGACACTATTGACAATGTCAAGTCTAAAA-TCCAAGATAAGGAAGGT 24702 Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 | || ||||||||||| ||||| || ||||| || || ||| ||||||||| | ||| Sbjct 24703 ATTCCTCCAGATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACT 24762 Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGA 23835 ||| ||| |||||||| ||||| || ||||| ||||||||||||||||| ||| |||| Sbjct 24763 TTATCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGT 24822 Query 23836 GG 23837 || Sbjct 24823 GG 24824 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || || || |||||| | |||||||| || | Sbjct 24826 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCT 24885 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | |||| || ||||| |||||| | || |||||||| Sbjct 24886 GACACAATCGATAACGTTAAATCTAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGATCA 24944 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || || ||| | ||||||| | ||||| || ||||| Sbjct 24945 ACAACGTTTGATTTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTGTCTGACTACAA 25004 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| ||||||||||||||||| ||| |||| || Sbjct 25005 CATTCAAAAGGAATCCACTTTACATTTAGTTTTAAGATTGAGAGGTGG 25052 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||| | || || || || || || | |||||||| || | Sbjct 25054 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 25113 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | |||| | ||||| |||||| | || |||||||| Sbjct 25114 GACACTATTGACAATGTCAAGTCTAAAA-TCCAAGACAAGGAAGGTATTCCTCCAGATCA 25172 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || || || ||| ||||||||| | |||||| ||||||||| Sbjct 25173 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTTTATCCGATTACAA 25232 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || ||||||||||| || || || |||| || Sbjct 25233 CATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGG 25280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999177685240