Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2023 161 2e-34 seq2193 156 1e-32 seq866 107 5e-18 >seq2023 Length=11923 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | || ||||| ||||||| ||||| || | |||||||| || Sbjct 4129 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 4070 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 4069 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4010 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || ||| || || ||||| || | ||| || ||||| || || Sbjct 4009 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 3950 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | ||| | ||||||||| Sbjct 3949 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911 >seq2193 Length=52601 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || | ||| ||||| ||||||| |||||||||| |||||||| || Sbjct 25269 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACC 25210 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| |||||||| || | |||||||| || || |||||||||||||| Sbjct 25209 GTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 25150 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| ||| || || ||||| || | ||| || ||||| || || Sbjct 25149 GTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 25090 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || || | ||| | |||||| Sbjct 25089 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| ||||| | ||||| || | ||||||||| || ||||||| ||||| || Sbjct 25023 AGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGCTTACC 24964 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||| || | |||||||| || || |||||||||||||||||||| || ||| | || Sbjct 24963 AGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAAT-TTTAGATT 24905 Query 225636 CACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | | | ||||| ||||| || | ||| || ||||| ||||| ||||| || || || | Sbjct 24904 TAACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGG 24845 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | ||| | |||||| Sbjct 24844 TCTTGACGAAAATTTGCAT 24826 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| ||||| | ||||| |||| |||||||| || ||||| | ||||| || Sbjct 24795 AGTGGATTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCTTCCAATTGCTTACC 24736 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| || || | |||||||| || || |||||||||||||| |||||||| || ||| Sbjct 24735 AGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTT 24676 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || ||||| || | ||| || ||||| || || ||||| || || ||||| Sbjct 24675 GACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGT 24616 Query 225696 TTTTATGAACACTTGCATT 225714 || | ||| | ||||||| Sbjct 24615 CTTGACGAAGATTTGCATT 24597 >seq866 Length=29538 Score = 107 bits (118), Expect = 5e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || ||||||||||| |||||||| Sbjct 25296 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCAGAGACATCACC 25355 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 |||| ||||| | ||| ||||| || |||| || |||||||| ||| Sbjct 25356 ACCTTGGGTTTCAATAACTGGTAAAGCGGTTAAAGAACCACCACCTAAA 25404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192492543355820