Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03]
2,530 sequences; 14,889,443 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2023 161 2e-34
seq2193 156 1e-32
seq866 107 5e-18
>seq2023
Length=11923
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| | ||| | ||| | || ||||| ||||||| ||||| || | |||||||| ||
Sbjct 4129 TCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 4070
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||||| ||||| ||||| ||||| | || ||||||||| || ||||||||||||||
Sbjct 4069 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 4010
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || || ||||| || | ||| || ||||| || ||
Sbjct 4009 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 3950
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | |||||||||
Sbjct 3949 AGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 3911
>seq2193
Length=52601
Score = 156 bits (172), Expect = 1e-32
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | || | ||| ||||| ||||||| |||||||||| |||||||| ||
Sbjct 25269 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACC 25210
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| |||||||| || | |||||||| || || ||||||||||||||
Sbjct 25209 GTCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 25150
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||| || ||| ||| || || ||||| || | ||| || ||||| || ||
Sbjct 25149 GTCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAAT 25090
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || || | ||| | ||||||
Sbjct 25089 GGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25054
Score = 149 bits (164), Expect = 1e-30
Identities = 154/199 (77%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||||||||| ||||| | ||||| || | ||||||||| || ||||||| ||||| ||
Sbjct 25023 AGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTGCTTACC 24964
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
|||||| || | |||||||| || || |||||||||||||||||||| || ||| | ||
Sbjct 24963 AGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAAT-TTTAGATT 24905
Query 225636 CACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694
| | | ||||| ||||| || | ||| || ||||| ||||| ||||| || || || |
Sbjct 24904 TAACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTTAAGG 24845
Query 225695 TTTTTATGAACACTTGCAT 225713
| || | ||| | ||||||
Sbjct 24844 TCTTGACGAAAATTTGCAT 24826
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||||||||| ||||| | ||||| |||| |||||||| || ||||| | ||||| ||
Sbjct 24795 AGTGGATTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCTTCCAATTGCTTACC 24736
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
||| || || | |||||||| || || |||||||||||||| |||||||| || |||
Sbjct 24735 AGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTT 24676
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| || || ||||| || | ||| || ||||| || || ||||| || || |||||
Sbjct 24675 GACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGT 24616
Query 225696 TTTTATGAACACTTGCATT 225714
|| | ||| | |||||||
Sbjct 24615 CTTGACGAAGATTTGCATT 24597
>seq866
Length=29538
Score = 107 bits (118), Expect = 5e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||| ||||| || |||||||| || || ||||||||||| ||||||||
Sbjct 25296 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCAGAGACATCACC 25355
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578
|||| ||||| | ||| ||||| || |||| || |||||||| |||
Sbjct 25356 ACCTTGGGTTTCAATAACTGGTAAAGCGGTTAAAGAACCACCACCTAAA 25404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192492543355820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |