Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2332 345 4e-90 >seq2332 Length=8947 Score = 345 bits (382), Expect = 4e-90 Identities = 632/921 (69%), Gaps = 39/921 (4%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||| || || || |||| |||||| || || |||||||| || |||| Sbjct 1326 AACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAA 1267 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTG--CGTTGTAATGTTTTTCACACTTT 4364 ||||||||||||||||||||||| ||||| ||| | || || ||| | | Sbjct 1266 TGAAATATTTTCCATAAAATCAAATGGATT--TTGAACATTATAGACTTTCTTATTACCA 1209 Query 4365 AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTA 4424 | || || | |||| || || |||||||| | ||| || | ||| | || | ||| Sbjct 1208 AATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTTC 1149 Query 4425 ATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 || || | ||| || || |||| || | || ||| | || | ||| ||| || ||| Sbjct 1148 ATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGCT 1089 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAAT 4544 || || || | || | | ||| | |||| |||| ||| | |||| ||| Sbjct 1088 TCAACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGCAAATAAT 1029 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||||||||| ||| |||||||| ||||| | ||| | ||| || ||||| ||| Sbjct 1028 AAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGTT 969 Query 4605 AATCCGGGCATT------------------------AAACCTCTCTTTTTAAGCCAAAAT 4640 || || ||||| |||||||| || || | ||| || Sbjct 968 AAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAAA 909 Query 4641 ATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC-G 4699 |||| |||||||| ||| |||||| || ||||| ||||| ||||| || ||||||| Sbjct 908 ATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCTT 849 Query 4700 GGACCCGA-ACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758 | | | | || || | | || |||||||| |||||||||| | ||||||| | Sbjct 848 TCAGCATATAAGACCT--CAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTTTCTTC 791 Query 4759 TAACGCACGGAAT-TGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGA 4817 ||| || ||||| ||| | ||||| |||||||| | | ||| ||| || | | Sbjct 790 TAATACATGGAATATGT-TCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCCTTA 732 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 |||||||| || |||| ||| ||| |||| ||||| |||||||| || ||| || Sbjct 731 ATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTGG 672 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC-GTTACAAAATCTTTCTACTAA 4936 || || ||||| || ||||||| | | ||||||||| | | ||||| |||| | ||| Sbjct 671 AAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTAA 613 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 ||||| || || ||||| ||| || ||||| || || || || |||| || ||||| Sbjct 612 ATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGTA 553 Query 4997 CTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTC 5053 ||| ||| || | ||| | |||| | | ||||||||| ||||||||| ||| Sbjct 552 TCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTTC 493 Query 5054 TTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTG 5113 |||| |||||||||| || ||||| ||||| ||||| | |||||| ||| |||| Sbjct 492 TTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCT 433 Query 5114 AATCGGAAGTATGACAAATCT 5134 ||| |||| || |||||||| Sbjct 432 AATTGGAAACATAACAAATCT 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036432192490