Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2023 168 1e-36 seq2193 165 2e-35 >seq2023 Length=11923 Score = 168 bits (186), Expect = 1e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| || ||| ||||||||||||||||||| | || | ||||| |||| ||| Sbjct 4116 TGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGC 4057 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | |||||||||| |||||||| ||||||||||||||||| Sbjct 4056 TTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 3997 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | ||| || | || |||||||| |||| ||| ||||| | || || |||||||| || Sbjct 3996 GATTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATAGTCTTACCAGTT 3937 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 || ||||| ||||| || |||||||| Sbjct 3936 AAGGTCTTGACGAAAATTTGCATTTT 3911 >seq2193 Length=52601 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| ||| ||| ||||| ||||||||||||| | || | || || |||| ||| Sbjct 25029 ATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCTAATTG 24970 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || || || |||||||||||||| || |||||||| ||||||||||| || || Sbjct 24969 CTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTT 24910 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||| ||| ||||||| ||||| |||| ||| ||||| | |||||| |||||||| || Sbjct 24909 AGATTTAACGTTATCGATTGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGT 24850 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||| Sbjct 24849 TAAGGTCTTGACGAAAATTTGCAT 24826 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| ||| ||| ||||| ||||||||||| | | || | || || || | ||| Sbjct 24801 ATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGATAAAGTTCTACCGTCTTCCAATTG 24742 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||| |||||||||||||| || |||||||| ||||| |||||||| || Sbjct 24741 CTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTT 24682 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || | || |||||||| |||| ||| ||||| | || || |||||||| || Sbjct 24681 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGT 24622 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 |||||||| ||||| || |||||| Sbjct 24621 TAAAGTCTTGACGAAGATTTGCATT 24597 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| || ||| |||||||||||||| || | | || | || || || | ||| Sbjct 25257 ATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGATAAAGTTCTACCGTCTTCCAATTG 25198 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || || || |||||||||||||| || |||||||| |||||||||||||| || Sbjct 25197 CTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGGATTTT 25138 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || | || |||||||| |||| ||| ||||| | || || |||||||| || Sbjct 25137 AGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCAGT 25078 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || ||||| Sbjct 25077 TAAGGTCTTGACGAAAATTTGCAT 25054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046705269294620