Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20gorwiae_20[genbank_20GCA_5F001655765.1_202016-06-03] 2,530 sequences; 14,889,443 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2332 340 2e-88 >seq2332 Length=8947 Score = 340 bits (376), Expect = 2e-88 Identities = 628/923 (68%), Gaps = 35/923 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| |||||||| || ||| | |||| ||||| || || ||||| | Sbjct 1329 CATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGC 1270 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 |||||| |||||||||||||||||||||||||| | |||||| || ||| Sbjct 1269 TAATGAAATATTTTCCATAAAATCAAATGGATTTTGAACATTATAGACTTTCTTATTACC 1210 Query 23325 TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTT 23384 ||| | ||| | ||||| || |||||||||| ||||||||||||||| | | ||| Sbjct 1209 AAATGCAACTAATAATCTATCGGCAACAAATTCAACATATTGACACATCAATTTACTGTT 1150 Query 23385 TATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGC 23444 ||||||| || | ||||| | |||||| || || |||||||| ||| || Sbjct 1149 CATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCCTTTTCAATATCAACTGC 1090 Query 23445 ATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAA 23504 || ||| || | | | || |||| | ||| || ||||||| ||| || Sbjct 1089 TTCAACAATAATCTTTTCGACAATTTCTGGATCTGGTCTATTATTTAAATGAGCAAATAA 1030 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 |||||| ||||||||| ||||| |||||||| |||| ||| |||||||| ||||| || Sbjct 1029 TAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTTGAAAAAGT 970 Query 23565 TAATCCTGGCATT------------------------AATCCTCGTTTTTTAATCCAAAA 23600 ||| |||||||| || |||| ||| || | ||| || Sbjct 969 TAAACCTGGCATNNNNNNNNNNNNNNNNNNNNGCATCAAACCTCTTTTCTTTAACCAGAA 910 Query 23601 TATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 || | ||||||||||| |||||||||||| ||||| || |||||||| || | | Sbjct 909 AATAGATGCAAATGATCCACTAAAGAAAATACCTTCAACGGCAGCAAAGGCAACTAATCT 850 Query 23661 TGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTT 23720 | | || || | | | ||||| ||||||| || || ||||| ||| || | | Sbjct 849 TTCAGCATATAAGACCTCAGTATCAGTAATCCATCTTAATGCCCAATCAGCTTTTCTTCT 790 Query 23721 TACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGT 23777 | ||| ||| |||||| || || || | || | |||| || ||| | Sbjct 789 AATACATGGAATATGTTCAATAGCATTAAATAAGTAA---TCAGCTTCCTTTGGATCCTT 733 Query 23778 TATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTG 23837 ||||| |||||||||| | ||| |||| ||||||||||||||||| ||| || Sbjct 732 AATATAAGTATCAATTAAAAGGGAATAAGTTTCTGAATGAATATTTTCAATCATAATTTG 673 Query 23838 AAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCAT-TAAAAAATCTTTTAGCTA 23896 || |||||||| || ||||||||| | |||||| || | |||||| ||| | || Sbjct 672 GAAACCATAAAATGATTTAGCTTCAGGAATTTGAACTTCTGCTGAAAAAT-TTTCAATTA 614 Query 23897 AATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAAT 23956 ||||||| ||||||||||||||| ||||||||||| || | || || || | Sbjct 613 AATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGCTAATACTCGAGAAATGAAGT 554 Query 23957 GTCTTTCATCAGTTGATAATTT---TTTCCAATCATTAATATCTTTTGATAAATCAACTT 24013 |||||||||| |||||| | ||||||||| | |||||| |||||||| || Sbjct 553 ATCTTTCATCATCATTTAATTTATCTCTCCAATCATGTAAATCTTTACTTAAATCAATTT 494 Query 24014 CATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTT 24073 | ||| | |||||||| ||| || ||| || | | ||||||| |||| || | Sbjct 493 CTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATC 434 Query 24074 GTATTGGAAATATTACGAATCTA 24096 |||||||| || || |||||| Sbjct 433 TAATTGGAAACATAACAAATCTA 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521471507942000