Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1387 181 1e-40 >seq1387 Length=15432 Score = 181 bits (200), Expect = 1e-40 Identities = 577/885 (65%), Gaps = 11/885 (1%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| ||||| ||| | ||||| |||||||||||||| || ||| || ||||| | Sbjct 2203 TTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTT 2262 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 |||| || ||||| ||||| | | | | || || | |||| | | | | | | Sbjct 2263 CCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACCAAA-TGCAACTAAT 2321 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 ||||| || || |||||||| | |||||| ||||| |||| |||||||| |||| | | Sbjct 2322 AATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAAA 2381 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || || | || || || ||| || || || ||| |||| ||||| |||||| Sbjct 2382 CTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAATC 2441 Query 16913 CTAGCAACTCGTTCCTCGGAC-GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | | || ||| | | | ||| ||| || | ||| ||| | | ||| || || Sbjct 2442 TTTTCCACGATTTC-TGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAACAAGCAAA 2500 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| |||||| || || ||||| | || | ||| || || || || || || ||||| Sbjct 2501 ATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTGGCAT 2560 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 |||| |||||||||||| || || | ||| || || ||| |||||| ||||| || Sbjct 2561 TAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATACCTTC 2620 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 || | ||||| || | ||||| ||| || || | || | | | |||||| | Sbjct 2621 AACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTATCAGTGATCCATCT 2680 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTT 17211 |||| || |||||| | || ||| || ||| || || |||||||| | Sbjct 2681 TAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCATTAAATAAGTA 2740 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 || ||||| | | || | ||||| ||||| || | ||| || |||| || || Sbjct 2741 ATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTTCAGAATG 2800 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || ||||| || || || || ||||| | ||||||||||| Sbjct 2801 AATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGAACTTC 2860 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | | || ||| || |||||| || || || || || || || || || || Sbjct 2861 TGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAATGC 2920 Query 17392 CAATATATGCTT--AATGAAATATTTTTCGTC--CGGTGTA-AGAACGCGCCAGTCCTTT 17446 | | | ||| |||||||||| |||| || | | | | | | ||| || | | Sbjct 2921 TA--AGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAATCATGT 2978 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 ||||| || || ||| | |||||| | |||||||| || |||| || || || Sbjct 2979 AAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGTAA 3038 Query 17507 ATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTA 17551 | | |||||| |||| ||| || || || | |||| ||||| Sbjct 3039 AATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCTA 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533482963640