Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1387 244 1e-59 >seq1387 Length=15432 Score = 244 bits (270), Expect = 1e-59 Identities = 616/927 (66%), Gaps = 22/927 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| |||||| ||| | ||||| || ||||||||||| || |||| || ||||||| Sbjct 2203 TTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTTT 2262 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 ||||||| ||||| ||||| | | | | | ||| | || | | | | || Sbjct 2263 CCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACCAAATGCAACTAATA 2322 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 |||| || || |||||||| | |||||||||||| || | || || || |||| | | Sbjct 2323 ATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAAAC 2382 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || || | || | || ||| ||| || ||| || |||| ||||| ||| || | Sbjct 2383 TAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAATCT 2442 Query 16152 CGGTGGCTCGTGTTTCAGAC--GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | | || || || ||| ||| ||| | || ||| | || ||| || || Sbjct 2443 T--TTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAACAAGCAAA 2500 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 || ||||| ||||| ||||| | || | ||| || || |||||||| |||||||| Sbjct 2501 ATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTGGCAT 2560 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 | |||| ||||||||||||||| || | |||||||| || |||||| ||||| || Sbjct 2561 TAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATACCTTC 2620 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 ||||| ||||| || | ||||| ||| || || | || ||| | |||||| | Sbjct 2621 AACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTCAGTATCAGTGATCCATCT 2680 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 | |||| || |||||| | | |||||| || ||| || || ||||| || | Sbjct 2681 TAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCATTAAATAAGTA 2740 Query 16450 CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCTGAG 16507 || ||||| ||| | ||||| |||||||| | ||| | || |||| || Sbjct 2741 ATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTA--AAAGGGAATAAGTTTCAGAA 2798 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || || || || || || ||||| |||||||| || ||| || | ||||| ||| Sbjct 2799 TGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTTGAACT 2858 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 || | |||| ||| | || ||||| || ||||| ||| ||||||||| || Sbjct 2859 TCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAAAGAAT 2918 Query 16628 GCCAATATGTGCTT--AATGAAATATTTTTCGTCAGATGTAAGAATAT---GCCAATCTT 16682 || || | ||| |||||||||| |||| ||| | | ||| |||||| | Sbjct 2919 GCTAAGA--CTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAATCAT 2976 Query 16683 TTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTAT 16742 |||||| || || ||| | |||||| | |||||||| || |||| || || | Sbjct 2977 GTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCTTGT 3036 Query 16743 ACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCTAAGGA--TTC 16800 | | || |||||| |||| ||| || ||||| | || ||||| | ||| ||| Sbjct 3037 AAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCTACGT--GGATTTTC 3094 Query 16801 CTTTAACACGGGTTCATC---TTCCAT 16824 ||| || | |||||||| |||||| Sbjct 3095 CTTCAAGAGTGGTTCATCCTTTTCCAT 3121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402426510360