Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1308 500 1e-136 seq1387 367 2e-96 seq1180 113 5e-20 >seq1308 Length=6085 Score = 500 bits (554), Expect = 1e-136 Identities = 1412/2146 (66%), Gaps = 58/2146 (3%) Strand=Plus/Plus Query 52804 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 52862 |||| || |||||||| | ||| || || | || || | || ||| ||||| || || | Sbjct 3385 CAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAATACATACCAGTCT 3444 Query 52863 TTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTG 52922 | | || |||| ||||| ||||||||||| || | ||| | || || Sbjct 3445 TCAACCCCTTCTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTTGGGTCCT 3504 Query 52923 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 52982 ||||||||||||| ||||||| |||||| ||||| ||| | || || |||||||| | Sbjct 3505 TAATATGGATATTCAAAGATTGAGATTGATCAATGAATGCTGCTCTATCAGCAGCCATAT 3564 Query 52983 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 53042 || || ||||| | ||||||||| | || ||||| | ||||| || || | Sbjct 3565 CAATAATATGTTTTTGAGAAATTTCCCATACTGTCTTATATAAGGCTTTAATTTCATCAG 3624 Query 53043 GAAGGTTTG-TATTC--TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 53099 | | || | || | ||||| || ||| || | ||||| ||| | || | | | Sbjct 3625 GGATATTAGGTAATGATTGAATGGACCCATTATTTGAAATAATACTACTTTTAACGGCTT 3684 Query 53100 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 53159 ||||||| | | || |||| |||| | | | |||||||| | ||| |||| Sbjct 3685 CATTCCAAATACCTAAATCAACTAAATCTCTTAATAAAAATGGATTAACAATTTGGAATT 3744 Query 53160 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 53219 | |||| | ||||| | | ||||| || ||||| ||||| | | | ||||||| Sbjct 3745 CACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCATTAT 3804 Query 53220 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 | ||||| ||||| | ||||| ||||| |||||||| || ||||| | ||||| | Sbjct 3805 TACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTTCTTA 3864 Query 53280 GACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 53337 || ||| | || || || | ||||| || ||||||| ||| | || | ||| Sbjct 3865 ATCC--ATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCATAATTCAGTTGGTTT 3922 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 53393 ||||| | || | | |||| | || || ||| | Sbjct 3923 TCTATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAAC----CTTGATAAG 3978 Query 53394 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 53453 | ||||| ||||| | | |||| |||| | | || | ||| ||| |||| Sbjct 3979 ATTGATATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCGTGGTAAA 4038 Query 53454 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 53513 ||||||| || || | |||||| ||| ||||| | ||||||||| |||| | Sbjct 4039 TGGTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTT 4097 Query 53514 AGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572 | || || || || || || || ||||| || || | | | || ||||||| | || || Sbjct 4098 AAAGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTATTTTTCATA 4157 Query 53573 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 || || ||| |||||||||| ||||||||||||| ||| |||| |||||| | || Sbjct 4158 TTTGAATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTATTTAAATTA 4217 Query 53633 C---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-------AATTGTC- 53681 | | ||||| ||| | || | | ||| ||||| | ||| || Sbjct 4218 CGAGTAACAATC---TTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCA 4274 Query 53682 -CATCTATT---ACAAACA-TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 ||||| || |||||| || | || || || || || | |||||| || || || || Sbjct 4275 TCATCTTTTTCAACAAACGCTGGT-AAGGCGATTGAAGCTAAATTACAGACAGCAACTTC 4333 Query 53737 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 53796 | || | ||||| | || ||| || | ||| | || || | ||||| Sbjct 4334 TTCAGGTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAA 4393 Query 53797 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGT 53856 ||| | |||||| |||||| ||||| ||||| ||||| | || ||||| |||||||| Sbjct 4394 ATTCTTTTGATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGT 4453 Query 53857 TTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT-TGT 53915 |||| | |||| ||||| ||| | | ||| | | ||||| || || || | | Sbjct 4454 TTCAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAAT---AGTTTGTCT 4510 Query 53916 ATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT 53973 | | | ||| | ||| ||| | ||| ||| ||||||| || || || |||||| Sbjct 4511 ACCACGACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATC 4570 Query 53974 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 ||||||||| ||||| || | | || | ||| || || | | | ||| || Sbjct 4571 AGGTAATCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACG 4630 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 |||||||| | |||||||||||| | ||| |||| |||||||| |||| ||| || Sbjct 4631 CTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTC 4690 Query 54094 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 54153 || ||| ||| ||| ||| ||| | || | | |||||| |||||||| ||||| || Sbjct 4691 TTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAA 4750 Query 54154 GTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 54213 || | || | | | || || | || || || || ||||| | || | |||||||| Sbjct 4751 ATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTT 4810 Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 || |||| | | ||| || |||||||| ||||| | |||||| || || | ||||| Sbjct 4811 GTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATA 4870 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 ||| | | |||||||||| ||| || ||| || || || || | || || || Sbjct 4871 AGCCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAAT 4930 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 ||||| ||| ||| || |||||||| || || || || |||||| ||||| || Sbjct 4931 CAATGCACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAAC 4990 Query 54394 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 54453 || ||||| |||||||| ||| || || ||||||||||| || || ||| | Sbjct 4991 TAAGAAACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACC 5050 Query 54454 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT-GAGTCTATATCCC 54512 || || || | |||| || | | ||| || | || ||| || ||| ||||||| Sbjct 5051 ATGAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAG-GGATATCCC 5109 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 |||||| || | ||| || | ||| | | || || ||||||||| | | || Sbjct 5110 TACCATGAATACCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTAC 5169 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 54630 || | | | | || || ||| |||| ||||||||||| |||||||| || || ||| Sbjct 5170 CATTAACTCTTAATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATAATTATAATTGA 5229 Query 54631 AAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 54690 || || || ||||||| |||| |||| || | || ||| || || || | || Sbjct 5230 AA--TCACGATCGTAAACAATAGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT- 5286 Query 54691 CATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAA 54749 ||| | ||| ||||| || ||||||||||| | | || || || ||||| | | Sbjct 5287 CATAAGTCTCCTTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCAT 5346 Query 54750 ATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGG 54809 |||| || || | |||| | | || |||| | |||| ||| |||| ||| ||||| | Sbjct 5347 ATAATTCTTTACTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTAGATACAG 5406 Query 54810 CTATTCTAGCGGCTAGAATGGCATAATCCGGATG--TTGT-GTAGTACAAGTGGCTGCTA 54866 | |||||||| |||| |||||||||||| ||||| | || || || || || || Sbjct 5407 CAATTCTAGCAGCTAAAATGGCATAATCAGGATGAATAGTGGTCATATAA---GCAGCAG 5463 Query 54867 TTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 54912 ||||||| | | | || ||||| ||||| ||||| |||| ||| Sbjct 5464 TTTCGGCAGCTAAGTTATCTAATTCAACCGTGGTTACACCATGATA 5509 >seq1387 Length=15432 Score = 367 bits (406), Expect = 2e-96 Identities = 649/935 (69%), Gaps = 22/935 (2%) Strand=Plus/Plus Query 23825 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 23884 || || |||||| || ||||| || ||| || | ||||| ||||| |||||||| Sbjct 2183 TTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTT 2242 Query 23885 ACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTT 23942 ||| ||||||| ||||||||||| || || ||||||| ||||||||| | ||||| Sbjct 2243 ACCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTT 2302 Query 23943 TTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATT 24002 | | || ||| || | ||||| || || ||||| || | |||| ||||| | Sbjct 2303 ATTA--CCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAAT 2360 Query 24003 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA 24062 | ||| ||||| |||| | ||||||| | || |||| | | |||||| ||||||| Sbjct 2361 TTACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATA 2420 Query 24063 GAGACCGCGTCTGTTATAATAGATCTT----ACTGTTTCTTCACTCGGTGGATACAATAA 24118 || || || | |||| ||||| || ||||| | ||| || || Sbjct 2421 TCAACAGCTTCA---ACAATA-ATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAA 2476 Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 ||| ||| | ||||| || ||||| |||| || || ||||||| ||||||||| Sbjct 2477 ATGAGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTC 2536 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 || || || || | || ||||||| || | || || | ||| || || || ||||| Sbjct 2537 ATTTGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAA 2596 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 ||||||| ||||||||| ||||| || || ||||| |||| | |||||| |||| Sbjct 2597 TGATCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAA 2656 Query 24299 GGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 | | | ||| ||||| || |||||||| || || || | | |||||| || Sbjct 2657 GACTTCAGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAAT 2716 Query 24356 -TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 24414 ||| || ||||||||||| | || | ||| || |||||||| ||| ||||||| Sbjct 2717 ATGT-TCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAA 2775 Query 24415 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | ||||| ||| |||| |||||||| |||||||| |||||||| || ||||| Sbjct 2776 TTAAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATG 2835 Query 24475 ATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 || |||| || | ||| || |||||| |||| ||| |||||||||||| || | Sbjct 2836 ATTTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAA 2895 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || ||| || ||||| || || || || | || |||||| |||| || Sbjct 2896 TACCATCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCAT 2955 Query 24595 TTAGTTTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | | ||||| ||||||||| | ||| ||| || ||| | |||||| | ||||||| Sbjct 2956 TCAATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAA 3015 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 ||||||| ||||| || || || | | ||| || ||||||||| ||||||||| |||| Sbjct 3016 ATGATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAA 3075 Query 24712 CAAATCTATTTGGATTTT-TTGCAAGGATTGGTTC 24745 |||||||| |||||||| | ||| || |||||| Sbjct 3076 CAAATCTACGTGGATTTTCCTTCAA-GAGTGGTTC 3109 >seq1180 Length=50914 Score = 113 bits (124), Expect = 5e-20 Identities = 303/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 |||| ||| || ||||| | |||||| |||| ||||| |||||||| ||||| | Sbjct 28127 ACTTTATGACCCCCAAATTCTTTTGATTTGATTTTTCATTACAAGCATCCTTGTAAAGCA 28068 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 | |||| |||||| || | |||||||||| || || |||| | | | |||| Sbjct 28067 TATATGGGCCACCAGTCTCGGTTTGGGATTCTAATATAGCCATCCATAGTTTATGTGCCT 28008 Query 53901 TTATTATAGATTTGTATCTCTTT--TCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | | |||| | || | |||||||||||| ||| ||| | | ||||| Sbjct 28007 TGACGGTAGACAC--AGCTAATCCCTCTCTTTCGTATCTCTCATATAATTGGACGAACTC 27950 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 ||| || || || |||||| || |||| ||| | | |||||||| || | Sbjct 27949 GTCGCCATAACAATCACTCAATCCTGGTGCAACATCTGGAGAAAATAACGACCAGTCCGC 27890 Query 54019 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 54077 ||| || |||||||| |||| || | |||||| | ||| | | | ||| |||| ||| | Sbjct 27889 GTCTTCTTTCACTCGCCTCATGAATAAATCAGGCACCCATA-ATCCATAGAATAAATCCC 27831 Query 54078 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 54137 | ||||| || || || || || ||| ||| | | ||| | | | | ||||| Sbjct 27830 TAGTTCTTTGCTCTTCATTACCATGATTTTTTCTCATATCTAAAATATCAAAGATATCGC 27771 Query 54138 AATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 54197 |||||| || || | ||||| | | | || |||||||| || || ||||||| Sbjct 27770 CATGCCAAGGCTCTATATATATAGCGAATGCCCCCGGCCGTTTACCACCACCTTGATCTA 27711 Query 54198 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 54236 ||||| || ||||| ||| | || | | |||||||| Sbjct 27710 CATATCTTGCAGTGTTGTTAAACACGCGGAGCATTGGAA 27672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707699493040