Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1530 145 1e-29 seq1163 132 7e-26 >seq1530 Length=119309 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || || | || ||||| | | Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| |||||||| |||||||| ||||| |||||| Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25013 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| || || |||||||| || || || Sbjct 25012 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAAC 24953 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||||| ||||| |||||| | || |||||||||| ||| || Sbjct 24952 ATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGGTATGCAAATTT 24895 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || || | || ||||| | | Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| |||||||| |||||||| || || |||||| Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 25241 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| ||| || |||||||| || || || Sbjct 25240 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAAC 25181 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||||| ||||| ||||| | || |||||||||| ||| || Sbjct 25180 ATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGGTATGCAAATTT 25123 Score = 141 bits (156), Expect = 1e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | ||||| |||| || || ||||| || |||| | ||| | Sbjct 25591 ACAATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCT 25532 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || ||| | || ||||| |||||||| |||||||| ||||| ||| Sbjct 25531 TCCGACACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGAT 25472 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | |||||||| || ||||||||||| || || |||| ||| || || Sbjct 25471 CAACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTAC 25412 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || ||||| ||||| ||||| ||||| || ||| | ||| |||||||||| ||| | Sbjct 25411 AACATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGGTATGCAAATT 25352 Query 124776 T 124776 | Sbjct 25351 T 25351 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || || || || || | || ||||| | | Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| |||||||| |||||||| ||||| |||||| Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 24785 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||||||||| ||| || |||||||| || || || Sbjct 24784 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAAC 24725 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| ||||| ||||| || || | ||| |||||||| Sbjct 24724 ATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 24677 >seq1163 Length=41016 Score = 132 bits (146), Expect = 7e-26 Identities = 281/413 (68%), Gaps = 5/413 (1%) Strand=Plus/Plus Query 205557 AATTA-CATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCT 205614 ||||| ||| ||||| ||| || | |||||| ||||| | | |||| ||| ||| ||| Sbjct 7831 AATTAACATAGAATTG-ACAGAAGACATGACATGGTGGAAGAGCCATCTTTGCAAAATCA 7889 Query 205615 ATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattt 205674 |||||||| || | | || || ||||| | || || | |||| ||| ||| Sbjct 7890 GGCGGATTCCAAGCAGACATAATAATTCTTCTATCATATGGATTTGTCTTTAATTTTTTT 7949 Query 205675 atAATAT-GTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATA 205733 || | | |||| ||||| ||| |||||||| ||||||| ||||| ||| |||| Sbjct 7950 ATCACGTCGTGT-AATTGGTCATATCCTTGACCAGTATAATCAGTATCACAATCTTTATA 8008 Query 205734 TTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCT 205793 | ||| |||||||| | |||||| || |||||||| |||||||||||||||||| | Sbjct 8009 CTCAGCTCCAAAATGTCTCCATTGGAACCCATAAACCGGACCTAAATCACCTTCTCGACG 8068 Query 205794 ATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggat 205853 |||| | || || || | | ||||| || ||||| | |||||||| | || Sbjct 8069 ATCAGTTAATCCCAAATTGTCCAAATATTCACGAGAACCATTACCTTCCCAAATCTTGAC 8128 Query 205854 tcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913 ||||| | ||| | || | || ||| || |||| | |||||||| | || | Sbjct 8129 ACCTTTTTCACTTAACAACTTGGCATCAGTCGAACCAGCAACAAACCATAGGAGCTCATG 8188 Query 205914 AACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 || || || | | || | | |||||||| || | |||||| | |||| Sbjct 8189 AATGATACCCTTTGAGAAAACTCTCTTTGTTGTTAAGAGTGGAAAAGTGTCAT 8241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755438312886400