Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 145 1e-29
seq1163 132 7e-26
>seq1530
Length=119309
Score = 145 bits (160), Expect = 1e-29
Identities = 175/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || || || || || | || ||||| | |
Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||| |||||||| |||||||| ||||| ||||||
Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25013
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| || ||||||||||| || || |||||||| || || ||
Sbjct 25012 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAAC 24953
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|| ||||| ||||| ||||| ||||| |||||| | || |||||||||| ||| ||
Sbjct 24952 ATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGGTATGCAAATTT 24895
Score = 141 bits (156), Expect = 1e-28
Identities = 174/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || || || || || | || ||||| | |
Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||| |||||||| |||||||| || || ||||||
Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 25241
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| || ||||||||||| ||| || |||||||| || || ||
Sbjct 25240 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAAC 25181
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|| ||||| ||||| ||||| ||||| ||||| | || |||||||||| ||| ||
Sbjct 25180 ATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGGTATGCAAATTT 25123
Score = 141 bits (156), Expect = 1e-28
Identities = 176/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| || | ||||| |||| || || ||||| || |||| | ||| |
Sbjct 25591 ACAATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCT 25532
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || || ||| | || ||||| |||||||| |||||||| ||||| |||
Sbjct 25531 TCCGACACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGAT 25472
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||| | | |||||||| || ||||||||||| || || |||| ||| || ||
Sbjct 25471 CAACAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTAC 25412
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
|| || ||||| ||||| ||||| ||||| || ||| | ||| |||||||||| ||| |
Sbjct 25411 AACATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGGTATGCAAATT 25352
Query 124776 T 124776
|
Sbjct 25351 T 25351
Score = 136 bits (150), Expect = 6e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || || || || || | || ||||| | |
Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||| |||||||| |||||||| ||||| ||||||
Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 24785
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | ||||| || || ||||||||||| ||| || |||||||| || || ||
Sbjct 24784 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTAGAACATTATCTGACTACAAC 24725
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| ||||| ||||| ||||| ||||| || || | ||| ||||||||
Sbjct 24724 ATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 24677
>seq1163
Length=41016
Score = 132 bits (146), Expect = 7e-26
Identities = 281/413 (68%), Gaps = 5/413 (1%)
Strand=Plus/Plus
Query 205557 AATTA-CATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCT 205614
||||| ||| ||||| ||| || | |||||| ||||| | | |||| ||| ||| |||
Sbjct 7831 AATTAACATAGAATTG-ACAGAAGACATGACATGGTGGAAGAGCCATCTTTGCAAAATCA 7889
Query 205615 ATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattt 205674
|||||||| || | | || || ||||| | || || | |||| ||| |||
Sbjct 7890 GGCGGATTCCAAGCAGACATAATAATTCTTCTATCATATGGATTTGTCTTTAATTTTTTT 7949
Query 205675 atAATAT-GTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATA 205733
|| | | |||| ||||| ||| |||||||| ||||||| ||||| ||| ||||
Sbjct 7950 ATCACGTCGTGT-AATTGGTCATATCCTTGACCAGTATAATCAGTATCACAATCTTTATA 8008
Query 205734 TTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCT 205793
| ||| |||||||| | |||||| || |||||||| |||||||||||||||||| |
Sbjct 8009 CTCAGCTCCAAAATGTCTCCATTGGAACCCATAAACCGGACCTAAATCACCTTCTCGACG 8068
Query 205794 ATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggat 205853
|||| | || || || | | ||||| || ||||| | |||||||| | ||
Sbjct 8069 ATCAGTTAATCCCAAATTGTCCAAATATTCACGAGAACCATTACCTTCCCAAATCTTGAC 8128
Query 205854 tcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTC 205913
||||| | ||| | || | || ||| || |||| | |||||||| | || |
Sbjct 8129 ACCTTTTTCACTTAACAACTTGGCATCAGTCGAACCAGCAACAAACCATAGGAGCTCATG 8188
Query 205914 AACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966
|| || || | | || | | |||||||| || | |||||| | ||||
Sbjct 8189 AATGATACCCTTTGAGAAAACTCTCTTTGTTGTTAAGAGTGGAAAAGTGTCAT 8241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755438312886400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |