Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 360 2e-94
>seq1387
Length=15432
Score = 360 bits (398), Expect = 2e-94
Identities = 621/888 (70%), Gaps = 27/888 (3%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| ||| ||||||||||||||| || || ||||| || ||||||||||||||
Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCA-TCCCAATTCCAAC-A 16061
|||||||| ||||| ||| ||||||||| || | || | | |||| | |||| |
Sbjct 2262 TCCATAAAGTCAAATGGA--TTTTGAACATTATAAACCTTCTTATTACCAAATGCAACTA 2319
Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121
||||||| || || |||||||| | ||| || ||| || | ||||||||| |||| ||
Sbjct 2320 ATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATA 2379
Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181
| |||| || | ||| || || ||| | | |||||| |||| ||| ||||||| || |
Sbjct 2380 AACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAA 2439
Query 16182 TATCTCTTACTACACTATTTAACGGA--GGGTTTAAT----AAGTGTTTAAACATTATAC 16235
|||| | ||| |||| ||| ||| || | || || ||| | || ||
Sbjct 2440 ----TCTT-TTCCACGATTT-CTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAAC 2493
Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295
||||||||||| ||| || ||||| || |||| ||||| || ||||| || || | ||
Sbjct 2494 AAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAAC 2553
Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355
||||||||| |||| ||| || | ||| || || | ||||||||| ||| |||||| |
Sbjct 2554 CTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAA 2613
Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc-- 16413
|||||||||| || ||||||||||| |||| ||| | || | || | | ||
Sbjct 2614 TACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATA---TAAGACTTCAGTATCAG 2670
Query 16414 -tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472
|||||| || ||||||| |||||| | | | ||| || | || || ||||
Sbjct 2671 TGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCAT 2730
Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532
||||||| |||| ||| || |||| |||||||||||| |||| | |||
Sbjct 2731 TAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAG 2790
Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592
|||| ||||||||||| || || || ||||| ||||| || || ||||||| | |
Sbjct 2791 TTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAA 2850
Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652
|||| ||||| | |||| |||| ||| ||||| ||||| || ||||| || |
Sbjct 2851 TTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAG 2910
Query 16653 CAAAAAACGC-AAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAAC 16708
|||| || || ||| | | | ||| |||| | |||| | ||| | || | | | |
Sbjct 2911 CAAAGAATGCTAAGACTCT-TGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTC 2969
Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768
|| ||| ||||| || |||||| | ||||| |||||||||| || || | ||
Sbjct 2970 CAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCT 3029
Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
|| || || | || ||| || || | || ||| ||||||| ||||
Sbjct 3030 TTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACA 3077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462501171437800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |