Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1387 360 2e-94 >seq1387 Length=15432 Score = 360 bits (398), Expect = 2e-94 Identities = 621/888 (70%), Gaps = 27/888 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||| ||||||||||||||| || || ||||| || |||||||||||||| Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCA-TCCCAATTCCAAC-A 16061 |||||||| ||||| ||| ||||||||| || | || | | |||| | |||| | Sbjct 2262 TCCATAAAGTCAAATGGA--TTTTGAACATTATAAACCTTCTTATTACCAAATGCAACTA 2319 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 ||||||| || || |||||||| | ||| || ||| || | ||||||||| |||| || Sbjct 2320 ATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATA 2379 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | |||| || | ||| || || ||| | | |||||| |||| ||| ||||||| || | Sbjct 2380 AACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAA 2439 Query 16182 TATCTCTTACTACACTATTTAACGGA--GGGTTTAAT----AAGTGTTTAAACATTATAC 16235 |||| | ||| |||| ||| ||| || | || || ||| | || || Sbjct 2440 ----TCTT-TTCCACGATTT-CTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAAC 2493 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 ||||||||||| ||| || ||||| || |||| ||||| || ||||| || || | || Sbjct 2494 AAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAAC 2553 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 ||||||||| |||| ||| || | ||| || || | ||||||||| ||| |||||| | Sbjct 2554 CTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAA 2613 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc-- 16413 |||||||||| || ||||||||||| |||| ||| | || | || | | || Sbjct 2614 TACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATA---TAAGACTTCAGTATCAG 2670 Query 16414 -tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 |||||| || ||||||| |||||| | | | ||| || | || || |||| Sbjct 2671 TGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCAT 2730 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 ||||||| |||| ||| || |||| |||||||||||| |||| | ||| Sbjct 2731 TAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAG 2790 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| ||||||||||| || || || ||||| ||||| || || ||||||| | | Sbjct 2791 TTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAA 2850 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| ||||| | |||| |||| ||| ||||| ||||| || ||||| || | Sbjct 2851 TTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAG 2910 Query 16653 CAAAAAACGC-AAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAAC 16708 |||| || || ||| | | | ||| |||| | |||| | ||| | || | | | | Sbjct 2911 CAAAGAATGCTAAGACTCT-TGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTC 2969 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 || ||| ||||| || |||||| | ||||| |||||||||| || || | || Sbjct 2970 CAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCT 3029 Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || || || | || ||| || || | || ||| ||||||| |||| Sbjct 3030 TTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACA 3077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501171437800