Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1530 104 2e-17 >seq1530 Length=119309 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| ||||||||||| | | |||| ||| |||||| |||||||| || Sbjct 25164 GTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCA 25223 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | | ||||||||| || | ||||||||||| |||| |||| Sbjct 25224 GCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTG 25283 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | ||||||| | || ||||| || || Sbjct 25284 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTC 25343 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 25344 TTAACGAAAATTTGCAT 25360 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| ||||||||||| | | |||| ||| |||||| |||||||| || Sbjct 24708 GTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCA 24767 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || | | ||||||||| || | ||||||||||| |||| |||| Sbjct 24768 GCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTG 24827 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | ||||||| | || ||||| || || Sbjct 24828 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTC 24887 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 24888 TTGACGAAAATTTGCAT 24904 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| ||||||||||||| | |||| ||| ||||| |||||||| || Sbjct 24936 GTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCA 24995 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | | ||||||||| || | ||||||||||| |||| |||| Sbjct 24996 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTG 25055 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | ||| ||| | || || || || || Sbjct 25056 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTC 25115 Query 18309 TTTACAAAAATTTGCAT 18325 || || ||||||||||| Sbjct 25116 TTGACGAAAATTTGCAT 25132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||| ||||||||||||| | ||| ||| ||||| |||||||| || Sbjct 25392 GTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCA 25451 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | | ||||||||| || | ||||||||||| |||| ||| Sbjct 25452 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTA 25511 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | |||||| | || ||| | ||| || | || ||||| || || Sbjct 25512 ACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTC 25571 Query 18309 TTTACAAAAATTTGCATTTTTAA 18331 || || |||||||||||| |||| Sbjct 25572 TTGACGAAAATTTGCATTGTTAA 25594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335340643385