Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 104 2e-17
>seq1530
Length=119309
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||| ||||| ||||||||||| | | |||| ||| |||||| |||||||| ||
Sbjct 25164 GTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCA 25223
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| | || | | ||||||||| || | ||||||||||| |||| ||||
Sbjct 25224 GCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTG 25283
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| | || ||| | ||||||| | || ||||| || ||
Sbjct 25284 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTC 25343
Query 18309 TTTACAAAAATTTGCAT 18325
|| || |||||||||||
Sbjct 25344 TTAACGAAAATTTGCAT 25360
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||| ||||| ||||||||||| | | |||| ||| |||||| |||||||| ||
Sbjct 24708 GTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTTCTACCATCTTCTAATTGTTTACCA 24767
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
|| | || | | ||||||||| || | ||||||||||| |||| ||||
Sbjct 24768 GCGAAAATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTATCTTGGATTTTAGACTTG 24827
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| | || ||| | ||||||| | || ||||| || ||
Sbjct 24828 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTC 24887
Query 18309 TTTACAAAAATTTGCAT 18325
|| || |||||||||||
Sbjct 24888 TTGACGAAAATTTGCAT 24904
Score = 95.1 bits (104), Expect = 9e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||| ||||| ||||||||||||| | |||| ||| ||||| |||||||| ||
Sbjct 24936 GTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCTTCTAATTGTTTACCA 24995
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| | || | | ||||||||| || | ||||||||||| |||| ||||
Sbjct 24996 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTG 25055
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| | || ||| | ||| ||| | || || || || ||
Sbjct 25056 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTC 25115
Query 18309 TTTACAAAAATTTGCAT 18325
|| || |||||||||||
Sbjct 25116 TTGACGAAAATTTGCAT 25132
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||| ||||| ||||||||||||| | ||| ||| ||||| |||||||| ||
Sbjct 25392 GTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCA 25451
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| | || | | ||||||||| || | ||||||||||| |||| |||
Sbjct 25452 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTA 25511
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | | | |||||| | || ||| | ||| || | || ||||| || ||
Sbjct 25512 ACGTTATCGATAGTGTCGGAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTC 25571
Query 18309 TTTACAAAAATTTGCATTTTTAA 18331
|| || |||||||||||| ||||
Sbjct 25572 TTGACGAAAATTTGCATTGTTAA 25594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379335340643385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |