Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1387 178 1e-39 seq1308 127 2e-24 seq1530 102 7e-17 seq1705 86.0 6e-12 >seq1387 Length=15432 Score = 178 bits (196), Expect = 1e-39 Identities = 599/924 (65%), Gaps = 29/924 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| ||| | || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 3112 GATGAACCACTCTTGAAGGAAAATCCACGTAGATTTGTTATGTTTCCAATTAGATATCAT 3053 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | | ||||| || ||||||||||| |||||||| | |||||| | || Sbjct 3052 GAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGAT 2993 Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 | ||||||| | |||||| ||| | || || ||| ||| |||| ||| Sbjct 2992 TTAAGTAAGGATTTACATGATTGGAGAGATAAATTGAATGATGATGAAAGATATTTCATT 2933 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 | || || || || || || ||||| |||||||||||||| || ||||| | ||| Sbjct 2932 TCAAGAGTCTTAGCATTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAA 2873 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | |||||| |||||| ||| | | || || | || || || || |||||| | Sbjct 2872 AATTTTTCAGCAGAAGTTCAAATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATG 2813 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CA 57861 |||||||| | ||||| |||| ||||| || | || ||||| || | || || || Sbjct 2812 ATTGAAAATATTCATTCTGAAACTTATTCCCTTTTAATTGATACTTATATTAAAGATCCA 2753 Query 57862 ACGACGAGAAAC-GTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 | | ||| | | || | || || || || ||| || || ||| | || Sbjct 2752 AAG----GAAGCTGATTACTTATTTAATGCTATTGAACATATTCCTTGTATCAGAAGAAA 2697 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || || ||| || | | |||||| | | | | | || || || || | Sbjct 2696 AGCTGATTGGGCATTAAGATGGATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGT 2637 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || || || |||||||| |||||| || ||||| |||| || ||| | Sbjct 2636 TGCATTTGCTGCTGTTGAAGGTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTT 2577 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||| | || | ||||| || | || || || || || || | | || || Sbjct 2576 AAAGAAAAGAGGGTTAATGCCAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGA 2517 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC-GACGC 58158 || | |||||||||||||| || || | | |||| | ||||| ||| || | Sbjct 2516 AGGGTTACATACTGATTTTGCTTGTTTATTATTTGCTCATTTGAACAATAGACCAGATCC 2457 Query 58159 GGGATCGCATCTTGG---ACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 | | ||| ||| | ||||| || || || | || ||||| || | | ||| Sbjct 2456 AGAA----ATCGTGGAAAAGATTATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCA 2401 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || || |||| || | | ||||||||| | | ||||||| | || ||| Sbjct 2400 CTGATGCATTACCAGTTAGTTTATTAGGTATGAACTGTAAATTGATGTGTCAATATGTTG 2341 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAACAC 58330 | ||||||||||||||| | || | | | |||| ||| || ||| || Sbjct 2340 AATTTGTTGCCGACAGATTATTAGTTGCA---TTTGGTAATAAGAAGGT--TTATAATGT 2286 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 ||||||| ||||| |||||| | || || | | || || || |||||||| || Sbjct 2285 TCAAAATCCATTTGACTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTTTTGA 2226 Query 58391 aaaaaaaGTTAGCGAATATCaaaa 58414 ||| | |||| || |||||||| Sbjct 2225 AAAGAGAGTTTCTGATTATCAAAA 2202 >seq1308 Length=6085 Score = 127 bits (140), Expect = 2e-24 Identities = 416/642 (65%), Gaps = 6/642 (1%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || ||||||| | ||| || ||||||| || ||| | || | ||| | Sbjct 4622 TTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCT 4681 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || || ||| | | ||| | ||| || || | || | |||||| Sbjct 4682 AATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCA 4741 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | || | |||||| || || ||||||||||| || || |||||||| ||||| Sbjct 4742 TGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACG 4801 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || ||||||||| | || | || ||| || | | ||||||||| | || || Sbjct 4802 TGCGGTGTTGTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACC 4861 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCG 23639 || | | | || | | |||| || |||| || ||||| || || || || | Sbjct 4862 AGCAATATAAGCCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACT 4921 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 ||| || |||| || ||| ||||| ||| || || || || || || || |||| Sbjct 4922 CTTT-GAAATCAATGCACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTT 4980 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | || || |||||||| || |||||||| | | || ||| |||| || | | Sbjct 4981 TCATGGCAACTAAGAAACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAG 5040 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | || | || || || | | ||||| | ||| || | || || | | Sbjct 5041 TTGGTGAACCATGAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAG 5100 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC-- 23877 || ||| || || ||||| || || || | ||| || | | ||| ||||| || Sbjct 5101 GGATATCCCTACCATGAATACCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAG 5160 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | | | || |||| | | || | ||| || | || | ||||||||||||||||| Sbjct 5161 CAACTTTA--CCATTAACTCTTAATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATA 5218 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||| || || |||||||||| || || || ||||| || Sbjct 5219 ATTATAATTGAAATCACGATCGTAAACAATAGCTGAATTTAA 5260 >seq1530 Length=119309 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| | || || || || || ||| | || || ||| | ||| Sbjct 25588 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCTTCC 25529 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | ||| || |||||||| | || || || || Sbjct 25528 GACACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25469 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| || |||||| || ||| | ||| || ||| Sbjct 25468 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTACAAC 25409 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||| | ||| | || | ||| | || || |||| Sbjct 25408 ATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGGTA 25360 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || || ||| | || |||||| | || Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| || |||||||| | || || || || Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25013 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| || |||||| || || | ||| || ||| Sbjct 25012 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAAC 24953 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 24952 ATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 24904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || |||||| | || |||||| | || Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| || |||||||| | || || || || Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 25241 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || ||| | || || ||||| ||||| || ||||| || || || | | || || || Sbjct 25240 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTA-GAACATTATCTGACTACAA 25182 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 25181 CATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGGTA 25132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || |||||| | || |||||| | || Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| || |||||||| | || || || || Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 24785 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || ||| | || |||||||| ||||| || ||||| || || || | | || || || Sbjct 24784 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTA-GAACATTATCTGACTACAA 24726 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| ||||| ||||| ||| | ||| | || | ||| | || || ||| Sbjct 24725 CATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 24677 >seq1705 Length=31738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| |||||||||||||| ||||| | || || || || || ||| | || |||||| Sbjct 13492 CAAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAAT 13551 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | || | |||||| | || ||||||||||| | || || | Sbjct 13552 CTTCTGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTG 13611 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || | |||| |||||||| || || || ||||| || ||| | || | Sbjct 13612 ACCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACT 13671 Query 31368 ATAACATTCAAAAAGAATCGAC 31389 | ||||| ||||| ||||| || Sbjct 13672 ACAACATCCAAAAGGAATCTAC 13693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755963494160