Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 178 1e-39
seq1308 127 2e-24
seq1530 102 7e-17
seq1705 86.0 6e-12
>seq1387
Length=15432
Score = 178 bits (196), Expect = 1e-39
Identities = 599/924 (65%), Gaps = 29/924 (3%)
Strand=Plus/Minus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
||||||||||| ||| | || ||||| ||||||||||| |||||||| ||| |||||
Sbjct 3112 GATGAACCACTCTTGAAGGAAAATCCACGTAGATTTGTTATGTTTCCAATTAGATATCAT 3053
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| |||||| | | ||||| || ||||||||||| |||||||| | |||||| | ||
Sbjct 3052 GAAATTTGGCAATTTTACAAGAAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGAT 2993
Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683
| ||||||| | |||||| ||| | || || ||| ||| |||| |||
Sbjct 2992 TTAAGTAAGGATTTACATGATTGGAGAGATAAATTGAATGATGATGAAAGATATTTCATT 2933
Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743
| || || || || || || ||||| |||||||||||||| || ||||| | |||
Sbjct 2932 TCAAGAGTCTTAGCATTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAA 2873
Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803
| |||||| |||||| ||| | | || || | || || || || |||||| |
Sbjct 2872 AATTTTTCAGCAGAAGTTCAAATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATG 2813
Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CA 57861
|||||||| | ||||| |||| ||||| || | || ||||| || | || || ||
Sbjct 2812 ATTGAAAATATTCATTCTGAAACTTATTCCCTTTTAATTGATACTTATATTAAAGATCCA 2753
Query 57862 ACGACGAGAAAC-GTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919
| | ||| | | || | || || || || ||| || || ||| | ||
Sbjct 2752 AAG----GAAGCTGATTACTTATTTAATGCTATTGAACATATTCCTTGTATCAGAAGAAA 2697
Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979
|| || ||| || | | |||||| | | | | | || || || || |
Sbjct 2696 AGCTGATTGGGCATTAAGATGGATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGT 2637
Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039
|| || || || || |||||||| |||||| || ||||| |||| || ||| |
Sbjct 2636 TGCATTTGCTGCTGTTGAAGGTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTT 2577
Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099
|||||| | || | ||||| || | || || || || || || | | || ||
Sbjct 2576 AAAGAAAAGAGGGTTAATGCCAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGA 2517
Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC-GACGC 58158
|| | |||||||||||||| || || | | |||| | ||||| ||| || |
Sbjct 2516 AGGGTTACATACTGATTTTGCTTGTTTATTATTTGCTCATTTGAACAATAGACCAGATCC 2457
Query 58159 GGGATCGCATCTTGG---ACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215
| | ||| ||| | ||||| || || || | || ||||| || | | |||
Sbjct 2456 AGAA----ATCGTGGAAAAGATTATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCA 2401
Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275
| || || |||| || | | ||||||||| | | ||||||| | || |||
Sbjct 2400 CTGATGCATTACCAGTTAGTTTATTAGGTATGAACTGTAAATTGATGTGTCAATATGTTG 2341
Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTACAACAC 58330
| ||||||||||||||| | || | | | |||| ||| || ||| ||
Sbjct 2340 AATTTGTTGCCGACAGATTATTAGTTGCA---TTTGGTAATAAGAAGGT--TTATAATGT 2286
Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390
||||||| ||||| |||||| | || || | | || || || |||||||| ||
Sbjct 2285 TCAAAATCCATTTGACTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTTTTGA 2226
Query 58391 aaaaaaaGTTAGCGAATATCaaaa 58414
||| | |||| || ||||||||
Sbjct 2225 AAAGAGAGTTTCTGATTATCAAAA 2202
>seq1308
Length=6085
Score = 127 bits (140), Expect = 2e-24
Identities = 416/642 (65%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||| || || ||||||| | ||| || ||||||| || ||| | || | ||| |
Sbjct 4622 TTCCACACGCTTCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCT 4681
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
| || ||||| || || ||| | | ||| | ||| || || | || | ||||||
Sbjct 4682 AATTTCTTCTTTACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCA 4741
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520
|| || | || | |||||| || || ||||||||||| || || |||||||| |||||
Sbjct 4742 TGGTTCTAAATAGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACG 4801
Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580
|| ||||||||| | || | || ||| || | | ||||||||| | || ||
Sbjct 4802 TGCGGTGTTGTTGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACC 4861
Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCCCG 23639
|| | | | || | | |||| || |||| || ||||| || || || || |
Sbjct 4862 AGCAATATAAGCCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACT 4921
Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699
||| || |||| || ||| ||||| ||| || || || || || || || ||||
Sbjct 4922 CTTT-GAAATCAATGCACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTT 4980
Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759
| | || || |||||||| || |||||||| | | || ||| |||| || | |
Sbjct 4981 TCATGGCAACTAAGAAACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAG 5040
Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819
| || | || || || | | ||||| | ||| || | || || | |
Sbjct 5041 TTGGTGAACCATGAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAG 5100
Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC-- 23877
|| ||| || || ||||| || || || | ||| || | | ||| ||||| ||
Sbjct 5101 GGATATCCCTACCATGAATACCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAG 5160
Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937
| | | | || |||| | | || | ||| || | || | |||||||||||||||||
Sbjct 5161 CAACTTTA--CCATTAACTCTTAATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATA 5218
Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
| ||| || || |||||||||| || || || ||||| ||
Sbjct 5219 ATTATAATTGAAATCACGATCGTAAACAATAGCTGAATTTAA 5260
>seq1530
Length=119309
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||| | || || || || || ||| | || || ||| | |||
Sbjct 25588 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCTTAGAAGTAGAATCTTCC 25529
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || | ||| || |||||||| | || || || ||
Sbjct 25528 GACACTATCGATAACGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25469
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || || ||||| ||||| || |||||| || ||| | ||| || |||
Sbjct 25468 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCCGACTACAAC 25409
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| ||||| ||| | ||| | || | ||| | || || ||||
Sbjct 25408 ATCCAAAAGGAATCTACTTTACATTTAGTGTTAAGATTAAGAGGTGGTA 25360
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || || || || ||| | || |||||| | ||
Sbjct 25132 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 25073
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| || |||||||| | || || || ||
Sbjct 25072 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCAGATCAA 25013
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||| | || || ||||| ||||| || |||||| || || | ||| || |||
Sbjct 25012 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATCCGACTACAAC 24953
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| ||||| ||| | ||| | || | ||| |||| || ||||
Sbjct 24952 ATCCAAAAGGAATCTACTTTACATTTAGTTTTAAGATTGAGAGGTGGTA 24904
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || || || |||||| | || |||||| | ||
Sbjct 25360 ATGCAAATTTTCGTTAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 25301
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| || |||||||| | || || || ||
Sbjct 25300 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGATCAA 25241
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
|| ||| | || || ||||| ||||| || ||||| || || || | | || || ||
Sbjct 25240 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGTA-GAACATTATCTGACTACAA 25182
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| ||||| ||||| ||| | ||| | || | ||| |||| || ||||
Sbjct 25181 CATCCAAAAGGAATCTACTTTACATTTAGTTTTGAGATTGAGAGGTGGTA 25132
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| | || || || || |||||| | || |||||| | ||
Sbjct 24904 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACCATCACCTTGGAAGTTGAATCTTCT 24845
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| | ||| || |||||||| | || || || ||
Sbjct 24844 GACACTATTGACAATGTCAAGTCTAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 24785
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
|| ||| | || |||||||| ||||| || ||||| || || || | | || || ||
Sbjct 24784 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTA-GAACATTATCTGACTACAA 24726
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||| ||||| ||||| ||| | ||| | || | ||| | || || |||
Sbjct 24725 CATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTAAGAGGTGGT 24677
>seq1705
Length=31738
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| |||||||||||||| ||||| | || || || || || ||| | || ||||||
Sbjct 13492 CAAAAATGCAAATTTTCGTCAAGACCTTAACTGGTAAGACTATTACCTTAGAAGTTGAAT 13551
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| | || | |||||| | || ||||||||||| | || || |
Sbjct 13552 CTTCTGACACCATTGACAATGTCAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCTG 13611
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||| || | |||| |||||||| || || || ||||| || ||| | || |
Sbjct 13612 ACCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACT 13671
Query 31368 ATAACATTCAAAAAGAATCGAC 31389
| ||||| ||||| ||||| ||
Sbjct 13672 ACAACATCCAAAAGGAATCTAC 13693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445755963494160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |