Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1387 152 1e-31 seq1163 113 9e-20 >seq1387 Length=15432 Score = 152 bits (168), Expect = 1e-31 Identities = 305/448 (68%), Gaps = 23/448 (5%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| |||||||| || ||||||||||| |||| || || ||||||||| Sbjct 2638 GTTGCATTTGCTGCTGTTGAAGGTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGG 2579 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| || || | |||| ||| | || | ||| ||||| || |||| ||| || Sbjct 2578 TTAAAGAAAAGAGGGTTAATGCCAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGAT 2519 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 ||||| | ||| || ||||| || | | || | ||| ||| ||| Sbjct 2518 GAAGGGTTACATACTGATTTTGCTTGTTTATTATTTGCTCA---TTTGAACAATAGACCA 2462 Query 102098 --TCAAGA-------GAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 || ||| |||| |||| ||||| |||||| || |||||| || Sbjct 2461 GATCCAGAAATCGTGGAAAAGATT------ATTGT---TGAAGCTGTTGATATTGAAAAA 2411 Query 102149 GAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGC 102208 |||| | |||| | | | | || |||| ||| | || |||||||| || |||||| | Sbjct 2410 GAATATTTCACTGATGCATTACCAGTTAGTTTATTAGGTATGAACTGTAAATTGATGTGT 2351 Query 102209 CAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAGCACTA 102267 || || |||||||||| || || | | |||| |||| | | || | || | ||| || Sbjct 2350 CAATATGTTGAATTTGTTGCCGACAGATTATTAGTTGCATTTGGTAATA-AGAAGGTTTA 2292 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 ||||||| || || || || ||||| |||||||| | | ||| || ||||| Sbjct 2291 TAATGTTCAAAATCCATTTGACTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTT 2232 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||||||| | || |||||| Sbjct 2231 TTTTGAAAAGAGAGTTTCTGATTATCAA 2204 >seq1163 Length=41016 Score = 113 bits (124), Expect = 9e-20 Identities = 204/291 (70%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| | | |||||| || || |||| |||||||| | || ||| ||| | | Sbjct 8122 ATTTGGGAAGGTAATGGTTCTCGTGAATATTTGGACAATTTGGGATTAACTGATCGTCGA 8063 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||| || || || || || ||||||||| | |||||||| ||||| ||| | Sbjct 8062 GAAGGTGATTTAGGTCCGGTTTATGGGTTCCAATGGAGACATTTTGGAGCTGAGTATAAA 8003 Query 35453 ACCTGTTCTTCCGATTATACTGG-AAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511 ||| | | ||||||||||| |||| || ||| ||||| | | | |||| | Sbjct 8002 GATTGTGATACTGATTATACTGGTCAAGGATA-TGACCAATTACACGACGTGATAAA-AA 7945 Query 35512 CCTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570 | | ||| ||||||| |||||||||| || |||||| | || |||||||| ||| Sbjct 7944 AATTAAAGACAAATCCATATGATAGAAGAATTATTATGTCTGCTTGGAATCCGCCTGATT 7885 Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGC--TCAATTTTATGT 35619 || ||||||||||| ||||| |||| || | |||||| ||||| Sbjct 7884 TTGCAAAGATGGCTCTTCCACCATG--TCATGTCTTCTGTCAATTCTATGT 7836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989560252148715