Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1308 520 1e-142 seq1387 378 9e-100 seq1180 116 5e-21 >seq1308 Length=6085 Score = 520 bits (576), Expect = 1e-142 Identities = 1416/2144 (66%), Gaps = 54/2144 (3%) Strand=Plus/Plus Query 64835 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 64893 |||| || |||||||| | ||| || || | || || | || ||| ||||| || || | Sbjct 3385 CAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAATACATACCAGTCT 3444 Query 64894 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 64953 | | || |||| ||||| ||||||||||| || | ||| | || || Sbjct 3445 TCAACCCCTTCTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTTGGGTCCT 3504 Query 64954 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 65013 ||||||||||||| ||||||| |||||| ||||| ||| | || || |||||||| | Sbjct 3505 TAATATGGATATTCAAAGATTGAGATTGATCAATGAATGCTGCTCTATCAGCAGCCATAT 3564 Query 65014 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 65073 || || ||||| | ||||||||| | || ||||| | ||||| || || | Sbjct 3565 CAATAATATGTTTTTGAGAAATTTCCCATACTGTCTTATATAAGGCTTTAATTTCATCAG 3624 Query 65074 GAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCAT 65130 | | || | || | |||||||| ||| || || ||||| ||| | || | | | Sbjct 3625 GGATATTAGGTAATGATTGAATGGACCCATTATTTGAAATAATACTACTTTTAACGGCTT 3684 Query 65131 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 65190 ||||||| | | || |||| |||| | | | |||||||| | ||| |||| Sbjct 3685 CATTCCAAATACCTAAATCAACTAAATCTCTTAATAAAAATGGATTAACAATTTGGAATT 3744 Query 65191 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 65250 | |||| | ||||| | | ||||| || ||||| ||||| | | | ||||||| Sbjct 3745 CACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCATTAT 3804 Query 65251 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 | ||||| ||||| | ||||| ||||| |||||||| || ||||| | ||||| | Sbjct 3805 TACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTTCTTA 3864 Query 65311 GACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 65368 || ||| | || || || | ||||| || ||||||| ||| | || | ||| Sbjct 3865 ATCC--ATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCATAATTCAGTTGGTTT 3922 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATG 65424 ||||| | || | | |||| | || || ||| | Sbjct 3923 TCTATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAAC----CTTGATAAG 3978 Query 65425 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 65484 | ||||| ||||| | | |||| |||| | | || | ||| ||| |||| Sbjct 3979 ATTGATATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCGTGGTAAA 4038 Query 65485 TGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTA 65544 ||||||| || || | |||||| ||| ||||| | ||||||||| |||| | Sbjct 4039 TGGTTTCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTT 4097 Query 65545 AGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 | || || || || || || || ||||| || || | | | || ||||||| | || || Sbjct 4098 AAAGCCATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTATTTTTCATA 4157 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || || ||| |||||||||| ||||||||||||| ||| |||| |||||| | ||| Sbjct 4158 TTTGAATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTATTTAAATTA 4217 Query 65664 C---TGACAAT-----TACTTTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCTC 65713 | | ||||| || ||| | || ||| | | | || || ||| || Sbjct 4218 CGAGTAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCA-TC 4276 Query 65714 ATCTATT---ACAAACA-TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 |||| || |||||| || | || || | || || | |||||| || || || || | Sbjct 4277 ATCTTTTTCAACAAACGCTGGT-AAGGCGATTGAAGCTAAATTACAGACAGCAACTTCTT 4335 Query 65770 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 65829 || | ||||| | || ||| || | ||| | || || | ||||||| Sbjct 4336 CAGGTGATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAAT 4395 Query 65830 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 65889 | | |||||| |||||| ||||| ||||| ||||| | || |||||||||||||||| Sbjct 4396 TCTTTTGATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTT 4455 Query 65890 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-TGTAT 65948 || | || | ||||| ||| | | ||| | | | ||||| || || || | || Sbjct 4456 CAGTTTGGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAAT---AGTTTGTCTAC 4512 Query 65949 CTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 | | ||| | ||| ||| | ||| ||| |||| || || || || |||||| Sbjct 4513 CACGACCTTCACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATCAG 4572 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 66066 ||||||||| ||||| || | | || | ||| || || | | | ||| || | Sbjct 4573 GTAATCCAGGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACGCT 4632 Query 66067 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGT 66126 ||||||| | |||||||||||| | ||| ||||||||||||| |||| ||| || | Sbjct 4633 TCATAAATAAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTT 4692 Query 66127 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGT 66186 | ||| ||| ||| ||| ||| | || | | |||||| ||||||| ||||| || | Sbjct 4693 TACCTTGATTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAAT 4752 Query 66187 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 66246 | | ||| | | | || || | || || || || ||||| | || | |||||||| | Sbjct 4753 AGAGGGCAAAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTTGT 4812 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 66306 | |||| | | ||| || |||||||| ||||| |||||||| || || | ||||| Sbjct 4813 TGAAAACACGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAG 4872 Query 66307 TTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 ||| | | |||||||||| ||| || ||| || || || || | || || || | Sbjct 4873 CCCCAGTAGAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCA 4932 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 |||| ||| ||| || |||||||| || || || || |||||| ||||| || || Sbjct 4933 ATGCACATGTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTA 4992 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 ||||| |||||||| ||| || || ||||||||||| || || ||| | | Sbjct 4993 AGAAACATGACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCAT 5052 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-GAGTCTATATCCCAT 66545 | || || | |||| || | | ||| || | |||||| || ||| ||||||| Sbjct 5053 GAGTGAAAAACTTTTGTGACATCATATTATAAGATTCAATAACTCGAG-GGATATCCCTA 5111 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 |||||| || | ||| || | ||| | | || || ||||||||| | | || Sbjct 5112 CCATGAATACCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCA 5171 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 66663 || | | | || || || ||| |||| ||||||||||| |||||||| || || ||||| Sbjct 5172 TTAACTCTTAATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATAATTATAATTGAAA 5231 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 66723 || || ||||||| |||| | || || | || ||| || || || | || || Sbjct 5232 --TCACGATCGTAAACAATAGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT-CA 5288 Query 66724 TGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAAT 66782 | | ||| ||||| || ||||||||||| | | || || || ||||| | || Sbjct 5289 TAAGTCTCCTTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCATAT 5348 Query 66783 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 || || | | |||| | | || |||| | |||| ||| |||| ||| ||||| || Sbjct 5349 AATTCTTTACTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTAGATACAGCA 5408 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATG--TTGT-GTAGTACAAGTGGCTGCTATT 66899 |||||||| |||| |||||||||||| ||||| | || || || || || || || Sbjct 5409 ATTCTAGCAGCTAAAATGGCATAATCAGGATGAATAGTGGTCATATAA---GCAGCAGTT 5465 Query 66900 TCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 66943 ||||| || | | || ||||| ||||| ||||| |||| ||| Sbjct 5466 TCGGCAGCTAAGTTATCTAATTCAACCGTGGTTACACCATGATA 5509 >seq1387 Length=15432 Score = 378 bits (418), Expect = 9e-100 Identities = 645/929 (69%), Gaps = 10/929 (1%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||||| || ||| || | ||||| ||||| |||||||| Sbjct 2183 TTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTT 2242 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 ||| ||||||| ||||||||||| || || |||||||| ||||||||||| || || Sbjct 2243 ACCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTT 2302 Query 35968 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 36027 | || ||| || | ||||| || || |||||||| | |||| ||||| || Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362 Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||| ||||| |||| | ||||||| | || |||| | | |||||| ||||||| Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422 Query 36088 GACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 36147 || || || ||||| | || ||||| | ||| || ||||| Sbjct 2423 AACAGCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGC 2482 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 ||| | ||||| || ||||| |||| || || ||||||| ||||||||| || || Sbjct 2483 AAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGA 2542 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 || || | || ||||||| || | || || | ||| || || || ||||||||||| Sbjct 2543 GAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCC 2602 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--- 36324 | ||||||||| ||||| || || ||||| |||| | ||| || |||| | | Sbjct 2603 ACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTC 2662 Query 36325 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT-TGTCT 36383 | | ||| ||||| || |||||||| || || || | | |||||| || ||| | Sbjct 2663 AGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGT-T 2721 Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 | ||||||||||| | || | ||| || |||||||| ||| |||||||| |||| Sbjct 2722 CAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAA 2781 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 | ||| |||| |||||||| |||||||| |||||||| || ||||| || ||| Sbjct 2782 GGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAG 2841 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 | || | ||| || ||||||| |||| ||| |||||||||||| || || || | Sbjct 2842 CTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCAT 2901 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 || || ||||| || || || || | || |||||| |||| | | | || Sbjct 2902 CAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATT 2961 Query 36624 TAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 36680 ||| ||||||||| | ||| ||| || ||| | |||||| | ||||||||||||| Sbjct 2962 TATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATG 3021 Query 36681 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 36740 | ||||| || || || | | ||| || ||||||||| ||||||||| |||||||||| Sbjct 3022 CTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATC 3081 Query 36741 TATTTTGATTTT-TTGCAAGGATTGGTTC 36768 || | |||||| | ||| || |||||| Sbjct 3082 TACGTGGATTTTCCTTCAA-GAGTGGTTC 3109 >seq1180 Length=50914 Score = 116 bits (128), Expect = 5e-21 Identities = 304/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 |||| ||| || ||||| | |||||| |||| ||||| |||||||| ||||| | Sbjct 28127 ACTTTATGACCCCCAAATTCTTTTGATTTGATTTTTCATTACAAGCATCCTTGTAAAGCA 28068 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 | |||| |||||| || | || ||||||| || || |||| | | |||| Sbjct 28067 TATATGGGCCACCAGTCTCGGTTTGGGATTCTAATATAGCCATCCATAGTTTATGTGCCT 28008 Query 65932 TTATTATAGATTTGTATCTCTTT--TCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | | |||| | || | |||||||||||| ||| ||| | ||||||| Sbjct 28007 TGACGGTAGACAC--AGCTAATCCCTCTCTTTCGTATCTCTCATATAATTGGACGAACTC 27950 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 ||| || || || |||||| || |||| ||| | | |||||||| || | Sbjct 27949 GTCGCCATAACAATCACTCAATCCTGGTGCAACATCTGGAGAAAATAACGACCAGTCCGC 27890 Query 66050 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTC 66108 ||| || |||||||| |||| || | |||||| | ||| | | | ||| |||||||| | Sbjct 27889 GTCTTCTTTCACTCGCCTCATGAATAAATCAGGCACCCATA-ATCCATAGAATAAATCCC 27831 Query 66109 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168 | ||||| || || || || || ||| ||| | | ||| | | | | ||||| Sbjct 27830 TAGTTCTTTGCTCTTCATTACCATGATTTTTTCTCATATCTAAAATATCAAAGATATCGC 27771 Query 66169 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 66228 |||||| || || | ||||| || | | || |||||||| || || ||||||| Sbjct 27770 CATGCCAAGGCTCTATATATATAGCGAATGCCCCCGGCCGTTTACCACCACCTTGATCTA 27711 Query 66229 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 ||||| || ||||| ||| | || | | |||||||| Sbjct 27710 CATATCTTGCAGTGTTGTTAAACACGCGGAGCATTGGAA 27672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157390529320