Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1530 102 8e-17 >seq1530 Length=119309 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | || ||||| || | ||||| || ||||| ||||| || ||| Sbjct 25362 CCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 25421 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 25422 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25481 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || | | || | ||||||| | || || Sbjct 25482 ATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACT 25541 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGT 139773 || | ||| | ||||| ||||| || || || ||||| |||||||| | | |||| Sbjct 25542 TCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGTTAATGT 25597 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||||||||| || | ||||| || ||||| ||||| || || Sbjct 25134 CCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 25193 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | |||||||||||| | |||| |||||| ||||| ||||| Sbjct 25194 AATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 25253 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || | | || | ||||| | | || || Sbjct 25254 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25313 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| ||||| || || || ||||| ||||||||| Sbjct 25314 TCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCATA 25361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 |||||||| || | ||||| || ||||| ||||| || ||| | ||| || |||| Sbjct 24921 AAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTTCTACCGTCT 24980 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | |||||||||||| | |||| |||||| ||||| || || || ||||| || || Sbjct 24981 TCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 25040 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 |||||| || | | || | ||||| | | || || || | ||| | ||| Sbjct 25041 TGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTC 25100 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || || || || ||||| ||||||||| Sbjct 25101 TTACCAGTTAAGGTCTTGACGAAAATTTGCATA 25133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || |||| ||| | ||| ||||| || | ||||| || ||||| ||||| || || Sbjct 24675 TGACCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 24734 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | ||| || ||||| | ||||||||||| | |||| |||||| ||||| || Sbjct 24735 GATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 24794 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| || || |||||| || | | || | ||||| | | || Sbjct 24795 GGGATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 24854 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||| | ||||| ||||| || || || ||||| ||||||||| Sbjct 24855 ACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATA 24905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052385901600