Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1387 394 9e-105 >seq1387 Length=15432 Score = 394 bits (436), Expect = 9e-105 Identities = 651/930 (70%), Gaps = 11/930 (1%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 |||| ||||| || |||||||| ||| |||||| |||||||| |||||||||||| Sbjct 2184 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 2243 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || | | ||| |||||||||||||| |||||||||||| | |||| | | || || | Sbjct 2244 CCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTT-TGAACATTATAAACCTTCTT 2302 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 | ||| | | | | || |||||| || |||| ||| |||| ||||||| |||| || | Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||||| || | || || | | || || ||| |||||||||| ||| Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 ||||| || ||||| || | || || | || || || | ||| Sbjct 2423 AACAGCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGC 2482 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 ||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| ||||| Sbjct 2483 AAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGA 2542 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || ||||| |||||||| || |||| ||| |||||||| || |||| |||||||| || Sbjct 2543 GAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCC 2602 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 |||||| || || ||||| |||||||| || | ||||| ||| || | | ||| Sbjct 2603 ACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTC 2662 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 | | | |||||| || ||||| |||| |||| || | ||| || || ||| Sbjct 2663 AGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTC 2722 Query 14102 AATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 ||||||||||||||| || || |||| |||| | ||| ||| || |||||||| | Sbjct 2723 AATAGCATTAAATAAGTAATCAGCTTC-CTTTGGATCTT-TAATATAAGTATCAATTAAA 2780 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 | | ||| ||||||| || || ||||| || || ||||| ||||| || || || Sbjct 2781 AGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTA 2840 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||||| | ||| ||||| | |||| |||| |||||||||||||| |||||| Sbjct 2841 GCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCA 2900 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||| || ||||| ||||| || | || ||| || ||| || |||| || | | Sbjct 2901 TCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAAT 2960 Query 14340 TT---TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || | ||||||| |||||||||| | ||| | ||| ||| | |||||||| Sbjct 2961 TTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGAT 3020 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456 || | ||||| || || | | ||| ||||| | |||| || ||||| | |||||| Sbjct 3021 GCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAAT 3080 Query 14457 CT-CGAAGATGTTTCTTTAAGAATTGGTTC 14485 || || ||| || ||| ||| | |||||| Sbjct 3081 CTACGTGGATTTTCCTTCAAG-AGTGGTTC 3109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716768368200