Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 394 9e-105
>seq1387
Length=15432
Score = 394 bits (436), Expect = 9e-105
Identities = 651/930 (70%), Gaps = 11/930 (1%)
Strand=Plus/Plus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|||| ||||| || |||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 2184 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 2243
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681
|| | | ||| |||||||||||||| |||||||||||| | |||| | | || || |
Sbjct 2244 CCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTT-TGAACATTATAAACCTTCTT 2302
Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741
| ||| | | | | || |||||| || |||| ||| |||| ||||||| |||| || |
Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362
Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801
||| |||||||||| || | || || | | || || ||| |||||||||| |||
Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422
Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861
||||| || ||||| || | || || | || || || | |||
Sbjct 2423 AACAGCTTCAACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGC 2482
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| |||||
Sbjct 2483 AAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGA 2542
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|| ||||| |||||||| || |||| ||| |||||||| || |||| |||||||| ||
Sbjct 2543 GAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCC 2602
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
|||||| || || ||||| |||||||| || | ||||| ||| || | | |||
Sbjct 2603 ACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGACTTC 2662
Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101
| | | |||||| || ||||| |||| |||| || | ||| || || |||
Sbjct 2663 AGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTC 2722
Query 14102 AATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159
||||||||||||||| || || |||| |||| | ||| ||| || |||||||| |
Sbjct 2723 AATAGCATTAAATAAGTAATCAGCTTC-CTTTGGATCTT-TAATATAAGTATCAATTAAA 2780
Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219
| | ||| ||||||| || || ||||| || || ||||| ||||| || || ||
Sbjct 2781 AGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTA 2840
Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279
||||| | ||| ||||| | |||| |||| |||||||||||||| ||||||
Sbjct 2841 GCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCA 2900
Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339
||| || ||||| ||||| || | || ||| || ||| || |||| || | |
Sbjct 2901 TCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAAT 2960
Query 14340 TT---TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396
|| | ||||||| |||||||||| | ||| | ||| ||| | ||||||||
Sbjct 2961 TTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGAT 3020
Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456
|| | ||||| || || | | ||| ||||| | |||| || ||||| | ||||||
Sbjct 3021 GCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAAT 3080
Query 14457 CT-CGAAGATGTTTCTTTAAGAATTGGTTC 14485
|| || ||| || ||| ||| | ||||||
Sbjct 3081 CTACGTGGATTTTCCTTCAAG-AGTGGTTC 3109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479716768368200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |