Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1387 376 2e-99 >seq1387 Length=15432 Score = 376 bits (416), Expect = 2e-99 Identities = 644/925 (70%), Gaps = 16/925 (2%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 |||| ||||| || |||||||| ||| |||||| ||||||||||||||||||||| Sbjct 2184 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 2243 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || | | ||| |||||||||||||| || ||||||||| | |||| | | || || | Sbjct 2244 CCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTT-TGAACATTATAAACCTTCTT 2302 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 | ||| | | | | ||||||||| || |||| ||| |||| ||||||| |||| || | Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 ||| |||||||||| || | || || | | || ||| ||| |||||||||| ||| Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422 Query 13590 CACAGCCTCGTTTATAATAATCTTA---ATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 ||||| || | ||||||||| | || || | || || || | ||| Sbjct 2423 AACAGCTTCA---ACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATG 2479 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 ||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| || Sbjct 2480 AGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATT 2539 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 ||| || ||||| |||||||| || |||| ||| |||||||| || |||| || ||||| Sbjct 2540 TGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGA 2599 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 ||| |||||| || || ||||| |||||||| || | || || ||| || | | | Sbjct 2600 TCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGAC 2659 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 || | | | |||||| || ||||| |||| |||| || | ||| || || Sbjct 2660 TTCAGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATG 2719 Query 13887 TTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATA 13944 ||| || ||||| ||||| | || |||| |||| | ||| || | || |||||||| Sbjct 2720 TTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTGGATCTTTAA-TATAAGTATCAATT 2777 Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004 | | | ||| ||||||| || || ||||| || || ||||| ||||| || || Sbjct 2778 AAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGAT 2837 Query 14005 CTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATA 14064 ||||||||| ||| || || | |||| |||| || ||||||||||||||| Sbjct 2838 TTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATA 2897 Query 14065 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14124 |||||| || ||||| ||||| || | || ||| || ||| || |||| || Sbjct 2898 CCATCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTC 2957 Query 14125 AGTTT---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 | ||| | ||||||| |||||||||| | ||| | ||| ||| | |||||||| Sbjct 2958 AATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAAT 3017 Query 14182 CTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14241 || | ||||| || || | | ||| ||||| | |||| || ||||| | ||| Sbjct 3018 GATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACA 3077 Query 14242 AATCT-TGAAGATGTTTCTTTAAGA 14265 ||||| | ||| || ||| |||| Sbjct 3078 AATCTACGTGGATTTTCCTTCAAGA 3102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577595039720