Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 376 2e-99
>seq1387
Length=15432
Score = 376 bits (416), Expect = 2e-99
Identities = 644/925 (70%), Gaps = 16/925 (2%)
Strand=Plus/Plus
Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410
|||| ||||| || |||||||| ||| |||||| |||||||||||||||||||||
Sbjct 2184 TTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTA 2243
Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469
|| | | ||| |||||||||||||| || ||||||||| | |||| | | || || |
Sbjct 2244 CCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTT-TGAACATTATAAACCTTCTT 2302
Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529
| ||| | | | | ||||||||| || |||| ||| |||| ||||||| |||| || |
Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362
Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589
||| |||||||||| || | || || | | || ||| ||| |||||||||| |||
Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422
Query 13590 CACAGCCTCGTTTATAATAATCTTA---ATAATGTCATTAGAAGGAGGATATTTTAGATG 13646
||||| || | ||||||||| | || || | || || || | |||
Sbjct 2423 AACAGCTTCA---ACAATAATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATG 2479
Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706
||| | |||||| ||||||||| ||| | || |||||||||| ||| | ||| ||
Sbjct 2480 AGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATT 2539
Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766
||| || ||||| |||||||| || |||| ||| |||||||| || |||| || |||||
Sbjct 2540 TGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGA 2599
Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826
||| |||||| || || ||||| |||||||| || | || || ||| || | | |
Sbjct 2600 TCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGAC 2659
Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886
|| | | | |||||| || ||||| |||| |||| || | ||| || ||
Sbjct 2660 TTCAGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATG 2719
Query 13887 TTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATA 13944
||| || ||||| ||||| | || |||| |||| | ||| || | || ||||||||
Sbjct 2720 TTCAATAGCATTAAATAAGTAATCAGCTTC-CTTTGGATCTTTAA-TATAAGTATCAATT 2777
Query 13945 AGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACAT 14004
| | | ||| ||||||| || || ||||| || || ||||| ||||| || ||
Sbjct 2778 AAAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGAT 2837
Query 14005 CTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATA 14064
||||||||| ||| || || | |||| |||| || |||||||||||||||
Sbjct 2838 TTAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATA 2897
Query 14065 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14124
|||||| || ||||| ||||| || | || ||| || ||| || |||| ||
Sbjct 2898 CCATCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTC 2957
Query 14125 AGTTT---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181
| ||| | ||||||| |||||||||| | ||| | ||| ||| | ||||||||
Sbjct 2958 AATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAAT 3017
Query 14182 CTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14241
|| | ||||| || || | | ||| ||||| | |||| || ||||| | |||
Sbjct 3018 GATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACA 3077
Query 14242 AATCT-TGAAGATGTTTCTTTAAGA 14265
||||| | ||| || ||| ||||
Sbjct 3078 AATCTACGTGGATTTTCCTTCAAGA 3102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478577595039720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |