Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1308 535 6e-147 seq1387 340 2e-88 seq1180 107 3e-18 >seq1308 Length=6085 Score = 535 bits (592), Expect = 6e-147 Identities = 1410/2135 (66%), Gaps = 36/2135 (2%) Strand=Plus/Plus Query 70797 CAAT-GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTT 70855 |||| ||||| ||||| | || || || |||| || | || ||| ||||| || || | Sbjct 3385 CAATAGTAAATTGAATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAATACATACCAGTCT 3444 Query 70856 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCG 70914 | | || |||| ||||| ||||||||||| || | ||| || | | || || Sbjct 3445 TCAACCCCTTCTTCCAACCGTAGAAATGCATACTGGTCAATTTACCCATTGTTGGG-TCC 3503 Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974 || || ||||||| || ||| |||||| ||||| ||| | || || |||||||| Sbjct 3504 TTAATATGGATATTCAAAGATTGAGATTGATCAATGAATGCTGCTCTATCAGCAGCCATA 3563 Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 71034 | || || ||||| | ||||||||| | || ||||| | ||||| || || Sbjct 3564 TCAATAATATGTTTTTGAGAAATTTCCCATACTGTCTTATATAAGGCTTTAATTTCATCA 3623 Query 71035 GGAAGGTTTG-TATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCT 71091 || | || | || | |||||||| ||| || || |||||| ||| |||| | || Sbjct 3624 GGGATATTAGGTAATGATTGAATGGACCCATTATTTGAAATAATACTACTTTTAACGGCT 3683 Query 71092 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAAT 71151 |||||||| | | || |||| |||| | | | |||||||| | ||| ||| Sbjct 3684 TCATTCCAAATACCTAAATCAACTAAATCTCTTAATAAAAATGGATTAACAATTTGGAAT 3743 Query 71152 TCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTA 71211 || |||| | ||||| | | ||||| || ||||| ||||| | | |||||| Sbjct 3744 TCACCAGCAAGAACTCTTCTGGAATAAATGTTTGAAGTATATGGTTCAAAACATTCATTA 3803 Query 71212 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTA 71271 || ||||| ||||| | ||||| ||||| |||||||| || ||||| || ||||| Sbjct 3804 TTACCCAAGATTTGTGATGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGAGTTTCTT 3863 Query 71272 AGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACA 71331 | ||||| | || || | ||||| || ||||||| ||| | || | |||| Sbjct 3864 AATCCATGCTTTGCCATATTTTGTTTTAAAGTATCCCAATCCCATAATTCAGTTGGTTTT 3923 Query 71332 ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCG 71391 | || | || ||| ||| ||| | | Sbjct 3924 CTATTCCATAAATCATATTGTAATAACCCTTGGGATGCTGGTGAACCTTGATAAGATTGA 3983 Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 ||||| ||||||| || ||||| |||| | | || | || | | ||||||||| Sbjct 3984 TATGGACCTTCTTCTTGGGCTAATTCAATAGAAGTTTCAACAGCAGCGTGGTAAATGGTT 4043 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || ||||| | |||| | ||| ||||| | ||||||||| |||| | | || Sbjct 4044 TCAAAAATTTGAATATTTAATTCTCTGGCTTCTTGAGAATCAAATGG-TAATCTTAAAGC 4102 Query 71512 -ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 || || || || || || ||||| || || | | | || ||||| | | || |||| || Sbjct 4103 CATGAAAGCATCAGCCAAACCTTGGACCCCCAAAGCAATTGGTCTATTTTTCATATTTGA 4162 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 | ||| |||||||||| ||||||||||||| ||| |||| |||||| | ||| | || Sbjct 4163 ATTTTTGGCTTCTGGAACAGGATAATAATTACGATCAATAACTTTATTTAAATTAC-GAG 4221 Query 71631 TATTACT-TTGACCACATCCTTTAGTTTGAGAAAATCAAATC--------TCC-CATCTA 71680 || | | ||| | || | || ||| ||||| | | | || ||||| Sbjct 4222 TAACAATCTTGGTAATTTCATGTAATTTATCAAAATTATACCATGAATGATCATCATCTT 4281 Query 71681 TTACAA-ACACGTTC--AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 || ||| | ||| | ||||| | || || | |||||| || || || || | || Sbjct 4282 TTTCAACAAACGCTGGTAAGGCGATTGAAGCTAAATTACAGACAGCAACTTCTTCAGGTG 4341 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | ||||| | ||||||| || | ||| | || || | |||||||| | || Sbjct 4342 ATGAATATTCAACAATTTCACAACATAAGTTAGATGATTTAATAATACCTAAATTCTTTT 4401 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 |||| |||||| ||||| ||||| ||||| | ||||| ||||||||||||||| | | Sbjct 4402 GATTGGTCTTTTCATTACAAGCATCTTTATATAACATAAATGGAGTACCAGTTTCAGTTT 4461 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAT-TCTTGTATCTCTTT 71916 | | ||||| ||| | | ||| | | | ||||| || | | ||| | | || Sbjct 4462 GGGCTTCTAAAATGGAATACCATAATTTTTGTGCCTTAATAGTTTGTCTACCACGACCTT 4521 Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 | | ||| |||| | ||||||| |||| || || || || || ||| ||||||| Sbjct 4522 -CACGTTCATATTTTTCATATAATTGTTCAAATTCTTCACCATAAACATCAGGTAATCCA 4580 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||| |||||| || | | |||| ||| || |||| | | || || |||||||| Sbjct 4581 GGAGCTTCATTAGGGGAAAATAATGTCCAATCACCATTTTGTTCCACACGCTTCATAAAT 4640 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 | |||||||||||| | ||| |||| |||||||| |||| || || || ||| | Sbjct 4641 AAATCAGGAATCCATAATGCTGGGAATAAATCTCTGGCTCTAATTTCTTCTTTACCTTGA 4700 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 || ||| ||| ||| | || | | |||||| |||||||| ||||| || || | ||| Sbjct 4701 TTTTTTCTAATATCAATAAAATCAAAAATATCTGAATGCCATGGTTCTAAATAGAGGGCA 4760 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | | || || | || || || || ||||| | || | |||||||| || |||| Sbjct 4761 AAAGCACCTGGTCTCTTATTACCACCTTGATCGACATAACGTGCGGTGTTGTTGAAAACA 4820 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | | ||| || |||||||| ||||| | |||||| || || | ||||| ||| | Sbjct 4821 CGTACCATGGGGATAATACCGTTGGAAGTACCATTAGTACCAGCAATATAAGCCCCAGTA 4880 Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 | ||||||||| ||| || ||| || || || || | || || || ||||| ||| Sbjct 4881 GAACGAATATTATGAATATGTAAACCAATACCACCAGCACTCTTTGAAATCAATGCACAT 4940 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 ||| || |||||||| || || || || |||||| ||||| || || ||||| Sbjct 4941 GTTTTCAAAGTATCATAAATCCCATCAATTGAATCATCTTTCATGGCAACTAAGAAACAT 5000 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 |||||||| ||| || || ||||||||||| || || ||| | || || || Sbjct 5001 GACGACATTTGTGGACTTGGGGTACCGGCATTAAATAAAGTTGGTGAACCATGAGTGAAA 5060 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | |||| |||| | ||| || | |||||| || ||||||| ||| || Sbjct 5061 AACTTTTGTGACATCATATTATAAGATTCAATAACTCGAGGGATATCCCTACCATGAATA 5120 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || | || || | ||| | | ||| || ||||||||| | | || ||| | | | Sbjct 5121 CCAATTGCCACTCTCATGATTAAATGTTGTGGTCTTTCAGCAACTTTACCATTAACTCTT 5180 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 72634 || || || ||| |||| ||||||||||| |||||||| || || ||||| || || | Sbjct 5181 AATAAATAAGATCTTTCTAAAGTTTTAAATCCAAAATAATTATAATTGAAA--TCACGAT 5238 Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATAC 72694 |||||| |||| | ||||| | || ||| || || || |||| ||| | | Sbjct 5239 CGTAAACAATAGCTGAATTTAATTCATCGGCATGTTCACAAATAATAT-CATAAGTCTCC 5297 Query 72695 TT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 72753 || ||||| || ||||||||||| | | || || |||||||| | |||| || | Sbjct 5298 TTGGAAATCATAGGAGAATGTTTATCGGTCTTGGGGTTAACATAATCATATAATTCTTTA 5357 Query 72754 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 72813 | |||| | | || |||| | |||| || |||| ||| ||||| || ||||| || Sbjct 5358 CTAACTTGAGAATATTGTTTGGTAGTTTGTTTATGTAAATTAGATACAGCAATTCTAGCA 5417 Query 72814 GCTAGAATGGCATAATCTGGATG--TTGT-GTAGTACAAGTGGCTGCTATTTCTGCTGCC 72870 |||| |||||||||||| ||||| | || || || || || || |||| || || Sbjct 5418 GCTAAAATGGCATAATCAGGATGAATAGTGGTCATATAA---GCAGCAGTTTCGGCAGCT 5474 Query 72871 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATA 72905 | | || ||||| ||||| ||||| |||| ||| Sbjct 5475 AAGTTATCTAATTCAACCGTGGTTACACCATGATA 5509 >seq1387 Length=15432 Score = 340 bits (376), Expect = 2e-88 Identities = 626/914 (68%), Gaps = 14/914 (2%) Strand=Plus/Plus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||||| || ||| || | ||||| ||||| ||||| || Sbjct 2183 TTTAGCCATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTT 2242 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 || | ||||| ||||||||||| || ||||| ||||| ||||||||||| || || Sbjct 2243 ACCAGCTAATGAAATATTTTCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTT 2302 Query 41875 AAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTC 41934 | || ||| || | ||||| || || | ||||| | |||| ||||| || Sbjct 2303 ATTACCAAATGCAACTAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTT 2362 Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||| ||||| |||| | ||||||| | || |||| | | |||||| ||||||| Sbjct 2363 ACAGTTCATACCTAATAAACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATC 2422 Query 41995 GACCGCGTCTGTTATAATAGATCTT----ACTGTTTCTTCACTCGGTGGATACAATAAAT 42050 || || || | |||| ||||| || ||||| | ||| || |||| Sbjct 2423 AACAGCTTCA---ACAATA-ATCTTTTCCACGATTTCTGGATCTGGTCTATTGTTCAAAT 2478 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 | ||| | ||||| || ||||| || | || |||||||||| ||||||||| | Sbjct 2479 GAGCAAATAATAAACAAGCAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCAT 2538 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 | || || || | || ||||||| || | || || | ||| || || || ||||||| Sbjct 2539 TTGAGAAAGTTAAACCTGGCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATG 2598 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 ||||| |||||| || ||||| || || ||||| |||| | ||| || |||| | Sbjct 2599 ATCCACTAAAGAAAATACCTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATATAAGA 2658 Query 42231 C---ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | | ||| ||||| || |||||||| || || || | | |||||| || Sbjct 2659 CTTCAGTATCAGTGATCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATAT 2718 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA 42347 ||| || |||||||| | || | ||| || |||||||| ||| ||||| || | Sbjct 2719 GTTCAATAGCATTAAATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTA 2778 Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 |||| ||| |||| |||||||| |||||||| || ||||| || ||||| || Sbjct 2779 AAAGGGAATAAGTTTCAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATT 2838 Query 42408 TGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467 | || || | || || ||||||| |||| |||| ||||||||| || || || | Sbjct 2839 TAGCTTCTGGAATTTGAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATAC 2898 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA 42527 | ||| || ||||| || || || || | || |||||| |||| || | | Sbjct 2899 CATCAGATGCAGCAAAGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCA 2958 Query 42528 ATTTAT---TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 |||||| ||||||||| | ||| ||| || ||| | |||||| | |||||||||| Sbjct 2959 ATTTATCTCTCCAATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATG 3018 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 |||||||||| || || || | | ||| || ||||||||| |||||| || ||||||| Sbjct 3019 ATGCTTCTGCTTTCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAA 3078 Query 42645 ATCTATTTGGATTT 42658 ||||| ||||||| Sbjct 3079 ATCTACGTGGATTT 3092 >seq1180 Length=50914 Score = 107 bits (118), Expect = 3e-18 Identities = 324/492 (66%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| || |||||| || | ||| | |||| ||| || ||||| | |||||| Sbjct 28158 TATTCCATGATTTCACAACATAAATTGGAAGACTTTATGACCCCCAAATTCTTTTGATTT 28099 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 |||| ||||| |||||||| ||||| ||| | || |||||| || | || ||| Sbjct 28098 GATTTTTCATTACAAGCATCCTTGTAAAGCATATATGGGCCACCAGTCTCGGTTTGGGAT 28039 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT--TATATTCTTGTA-TCTCTTTTCT 71919 |||| || || |||| | | ||||| | || | | || || || || Sbjct 28038 TCTAATATAGCCATCCATAGTTTATGTGCCTTGACGGTAGACACAGCTAATCCCT---CT 27982 Query 71920 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGG 71978 ||||||||| ||||||| | |||||||||| || || || | || ||||| || Sbjct 27981 CTTTCGTATCTCTCATATAATTGGACGAACTCGTCGCCATAA-CAATCACTCAATCCTGG 27923 Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAG 72038 ||| ||| | | || ||||| || | || || || ||||| |||| || | Sbjct 27922 TGCAACATCTGGAGAAAATAACGACCAGTCCGCGTCTTCTTTCACTCGCCTCATGAATAA 27863 Query 72039 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 |||||| | ||| | | | ||| |||| ||| || ||||| ||||| || || || || Sbjct 27862 ATCAGGCACCCATA-ATCCATAGAATAAATCCCTAGTTCTTTGCTCTTCATTACCATGAT 27804 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 | ||| | | ||| | | | | ||||| |||||| || || | ||||| || | Sbjct 27803 TTTTTCTCATATCTAAAATATCAAAGATATCGCCATGCCAAGGCTCTATATATATAGCGA 27744 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | ||||||||||| || || ||||||| ||||| || ||||| ||| | || | Sbjct 27743 ATGCCCCCGGCCGTTTACCACCACCTTGATCTACATATCTTGCAGTGTTGTTAAACACGC 27684 Query 72218 TCAACATTGGAA 72229 | |||||||| Sbjct 27683 GGAGCATTGGAA 27672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123486953480