Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 167 2e-36
seq1705 149 5e-31
>seq1530
Length=119309
Score = 167 bits (184), Expect = 2e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| |||||||| |||||||| | || || || ||||| |||||||| ||| |
Sbjct 25362 CCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 25421
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| |||||||||||||||| ||||| | |||||||||||||| || ||||
Sbjct 25422 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25481
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || ||||| ||| || | || || || ||| | ||||||
Sbjct 25482 ATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCTACT 25541
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||||||| || ||||| || | ||| || || |||||||||||
Sbjct 25542 TCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 25588
Score = 163 bits (180), Expect = 2e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||||||||||||||| | || || || ||||| |||||||| ||| |
Sbjct 24906 CCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAT 24965
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| |||| |||||||||||||||| ||||| | |||||||||||||| || ||||
Sbjct 24966 AATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 25025
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || ||||| ||| ||| | || || || || | ||| ||
Sbjct 25026 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25085
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||||||||| ||||| || | || || || ||||||||||||
Sbjct 25086 TCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATA 25133
Score = 141 bits (156), Expect = 7e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||| ||||||||||| | || || || ||||| |||||||| || |
Sbjct 25134 CCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 25193
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| |||| | |||||||||||||| ||||| | |||||||||||||| || |||
Sbjct 25194 AATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 25253
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || ||||| ||| ||| | || || || || | ||| ||
Sbjct 25254 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25313
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| ||||| ||||| || | || || || ||||||||||||
Sbjct 25314 TCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCATA 25361
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| ||||| || |||||||| | || || || ||||| |||||||| || |
Sbjct 24678 CCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 24737
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| |||| | |||||||||||||| |||||| | |||||||||||||| || |||
Sbjct 24738 AATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 24797
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || ||||| ||| ||| | || || || || | ||| ||
Sbjct 24798 ATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 24857
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| ||||| ||||| || | || || || ||||||||||||
Sbjct 24858 TCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATA 24905
>seq1705
Length=31738
Score = 149 bits (164), Expect = 5e-31
Identities = 172/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| |||||||| ||||| || | ||| || || ||||| |||||||| || |
Sbjct 13723 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 13664
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | ||||||||||| || |||||| | || || | ||||||||| ||||
Sbjct 13663 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGA 13604
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || ||| || ||| | || ||||| || | ||| ||
Sbjct 13603 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 13544
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368
||||||||||| || ||||| || | || || || ||||||||||| ||||
Sbjct 13543 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTTTG 13492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362170932467493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |