Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1387 306 3e-78 >seq1387 Length=15432 Score = 306 bits (338), Expect = 3e-78 Identities = 609/892 (68%), Gaps = 25/892 (3%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||||||||| ||||| || |||| ||||||||| Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACACCCTAATTCTAGTA 12977 |||||||| || || ||||||| ||||| ||| || ||| || ||| | | || Sbjct 2262 TCCATAAAGTCAAATGGATTTT--GAACATTATAAACCTTCTTATTACCAAATGCAACTA 2319 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | |||||||| |||||||| || | || || ||| || | ||||||||| |||| || Sbjct 2320 ATAATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATA 2379 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | | || || | || || || ||| | | |||||| |||||||| ||||| | || | Sbjct 2380 AACTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAA 2439 Query 13098 TGTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACATG 13154 | | || ||| | ||| ||| ||| | ||| ||| | | ||| | Sbjct 2440 TCT---TTTCCACGATTTCTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAACAAG 2496 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||||||| || || ||||||||||||| |||| || ||||| || |||| ||| | Sbjct 2497 CAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTG 2556 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| | ||||| ||| || | ||| || || | ||||| || || ||| || || | Sbjct 2557 GCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATAC 2616 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC---TA 13331 ||||||| || ||||| || | || |||||| |||| || | || | | || | Sbjct 2617 CTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATA--TAAGA-CTTCAGTATCAGTGA 2673 Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391 |||| || ||||| | |||||| | | | || |||| ||| || || |||| Sbjct 2674 TCCATCTTAATGCCCAATCAGCTTTTCTTCTGATACAAGGAATATGTTCAATAGCATTAA 2733 Query 13392 ATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 |||| |||| |||||| ||| |||||||||||| || || | | ||| ||| Sbjct 2734 ATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTT 2793 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | |||||||||||||| ||| ||||| || ||||| || || |||| |||| | | Sbjct 2794 CAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTT 2853 Query 13512 GAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 ||||||| | |||| |||| ||| ||||| ||||| || || ||| ||||||| Sbjct 2854 GAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAA 2913 Query 13572 aaaaaGC-AAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACAACTT---TAACC 13625 | || || ||| | ||| ||| || | | |||| | || ||| || | || Sbjct 2914 AGAATGCTAAGACT---CTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCC 2970 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | ||||| || |||||| | || ||| | |||||||| || || | || | Sbjct 2971 AATCATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTT 3030 Query 13686 TCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737 |||| || | ||| || || | ||| ||| ||||||| ||| |||| Sbjct 3031 TCTTGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCT 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972561883946