Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1387 264 3e-65 seq1530 168 2e-36 seq1705 167 5e-36 >seq1387 Length=15432 Score = 264 bits (292), Expect = 3e-65 Identities = 617/917 (67%), Gaps = 23/917 (3%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 || ||| ||||||||| || |||||||| || ||| || ||| | ||||| Sbjct 3091 AATCCACGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAG 3032 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 | || | || || |||||||||| |||||| | ||| | | | || ||| ||| Sbjct 3031 AAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGAT 2972 Query 268811 TGGAAAAAT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT-GCGTTTTT 268866 |||| | || || || || |||||| || || || | | |||| || || || Sbjct 2971 TGGAGAGATAAATTGAATGATGATGAAAGATATTTCATTTCA-AGAGTCTTAGCATTCTT 2913 Query 268867 TGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACA 268926 ||| | ||||||||| ||||| |||||| || | || || || | ||| || || Sbjct 2912 TGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTTCA 2853 Query 268927 GATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGA 268986 ||||| ||||| | || || || || || || || || |||||||||||||| || Sbjct 2852 AATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGA 2793 Query 268987 GATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-AT 269045 | || || ||||| ||||||||||| | ||| ||| | || | ||| || Sbjct 2792 AACTTATTCCCTTTTAATTGATACTTATATTAAAGATC-CAAAGGAAGCTGATTACTTAT 2734 Query 269046 TTTCTTCTATGAGAAC-TATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104 || | |||| |||| ||| ||| | |||| |||| |||| ||||| | | |||| Sbjct 2733 TTAATGCTATT-GAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGCATTAAGATGG 2675 Query 269105 ATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161 || | |||| | | |||| | ||||| |||||||| ||||| ||||| |||||| Sbjct 2674 ATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGTTGCATTTGCTGCTGTTGAAGGT 2615 Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221 || |||||| || || |||||| | || || ||||| ||||||||||| | |||||| Sbjct 2614 ATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGCCA 2555 Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || ||||||||||| || ||||| || | || || ||||| ||||| || || ||| Sbjct 2554 GGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTGCT 2495 Query 269282 TGTTTATTATTTACTAATTATCTTTCAC-ACAAACCTTCTCAAGATAGAGTATACGAAAT 269340 |||||||||||| || || || || | | ||| || ||| | || | | || Sbjct 2494 TGTTTATTATTTGCTCAT----TTGAACAATAGACCAGATCCAGAAATCGTGGAAAAGAT 2439 Query 269341 TATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCT 269400 ||| | | ||||||| | | |||| ||||| | | || || || || | | | | Sbjct 2438 TATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCACTGATGCATTACCAGTTAGTTT 2379 Query 269401 TATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCT 269460 | |||||||| | |||| |||| ||||| || | || || | || ||||| | Sbjct 2378 ATTAGGTATGAACTGTAAATTGATGTGTCAATATGTTGAATTTGTTGCCGACAGATTATT 2319 Query 269461 GGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAGTTTTATGGA 269517 || | || || || ||| || ||||| ||| ||||||| ||| |||||||| Sbjct 2318 AGTTGCATTTGG---TAATAAGAAGGTTTATAATGTTCAAAATCCATTTGACTTTATGGA 2262 Query 269518 GAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAA 269577 ||||| ||||||| ||||| |||| || || || ||| | || | | ||||| || Sbjct 2261 AAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTTTCTGATTATCAAAA 2202 Query 269578 AATGGGTGTAATGTCTA 269594 ||||| ||| ||| Sbjct 2201 GGCTGGTGTTATGGCTA 2185 >seq1530 Length=119309 Score = 168 bits (186), Expect = 2e-36 Identities = 199/267 (75%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| |||||| |||||||| || || || || ||||| Sbjct 25359 ATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 25418 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||||||||||| |||||| ||||||||||| | | |||||||| || Sbjct 25419 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25478 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || | || || || || | || ||| || |||| Sbjct 25479 GGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCT 25538 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || |||| |||||||||||||| || | || || || || || |||||| | | | Sbjct 25539 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGTTAATGTA 25598 Query 104570 G-TAT-TTATTAGAGTAATAATTATTT 104594 | ||| | ||| || ||||||||| || Sbjct 25599 GTTATATAATTTGATTAATAATTAATT 25625 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| |||||||| || || || || ||||| Sbjct 24903 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 24962 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||||||||||||| |||||| ||||||||||| | | |||||||| || Sbjct 24963 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25022 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || | || ||||| || | || || || ||| Sbjct 25023 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25082 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||||||||| | || || || || || ||||| Sbjct 25083 ACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| |||||||| || || || || |||||| Sbjct 25131 ATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 25190 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||||| ||||||| |||||| ||||||||||| | | |||||||| ||| Sbjct 25191 GATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 25250 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || | || ||||| || | || || || ||| Sbjct 25251 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25310 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || |||||||| || | || || || || || ||||| Sbjct 25311 ACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360 >seq1705 Length=31738 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||||| |||||||| || || || || ||||||||| Sbjct 13723 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 13664 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || ||||| || |||| || ||||| ||||| || Sbjct 13663 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGA 13604 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| | ||| ||||| || | ||| || || ||| || Sbjct 13603 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 13544 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | || || || || || |||||||| Sbjct 13543 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151370768957084