Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 264 3e-65
seq1530 168 2e-36
seq1705 167 5e-36
>seq1387
Length=15432
Score = 264 bits (292), Expect = 3e-65
Identities = 617/917 (67%), Gaps = 23/917 (3%)
Strand=Plus/Minus
Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750
|| ||| ||||||||| || |||||||| || ||| || ||| | |||||
Sbjct 3091 AATCCACGTAGATTTGTTATGTTTCCAATTAGATATCATGAAATTTGGCAATTTTACAAG 3032
Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810
| || | || || |||||||||| |||||| | ||| | | | || ||| |||
Sbjct 3031 AAAGCAGAAGCATCATTTTGGACTGCTGAAGAAATTGATTTAAGTAAGGATTTACATGAT 2972
Query 268811 TGGAAAAAT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT-GCGTTTTT 268866
|||| | || || || || |||||| || || || | | |||| || || ||
Sbjct 2971 TGGAGAGATAAATTGAATGATGATGAAAGATATTTCATTTCA-AGAGTCTTAGCATTCTT 2913
Query 268867 TGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACA 268926
||| | ||||||||| ||||| |||||| || | || || || | ||| || ||
Sbjct 2912 TGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAGCAGAAGTTCA 2853
Query 268927 GATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGA 268986
||||| ||||| | || || || || || || || || |||||||||||||| ||
Sbjct 2852 AATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATATTCATTCTGA 2793
Query 268987 GATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-AT 269045
| || || ||||| ||||||||||| | ||| ||| | || | ||| ||
Sbjct 2792 AACTTATTCCCTTTTAATTGATACTTATATTAAAGATC-CAAAGGAAGCTGATTACTTAT 2734
Query 269046 TTTCTTCTATGAGAAC-TATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG 269104
|| | |||| |||| ||| ||| | |||| |||| |||| ||||| | | ||||
Sbjct 2733 TTAATGCTATT-GAACATATTCCTTGTATCAGAAGAAAAGCTGATTGGGCATTAAGATGG 2675
Query 269105 ATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161
|| | |||| | | |||| | ||||| |||||||| ||||| ||||| ||||||
Sbjct 2674 ATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGTTGCATTTGCTGCTGTTGAAGGT 2615
Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221
|| |||||| || || |||||| | || || ||||| ||||||||||| | ||||||
Sbjct 2614 ATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTTAAAGAAAAGAGGGTTAATGCCA 2555
Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281
|| ||||||||||| || ||||| || | || || ||||| ||||| || || |||
Sbjct 2554 GGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGAAGGGTTACATACTGATTTTGCT 2495
Query 269282 TGTTTATTATTTACTAATTATCTTTCAC-ACAAACCTTCTCAAGATAGAGTATACGAAAT 269340
|||||||||||| || || || || | | ||| || ||| | || | | ||
Sbjct 2494 TGTTTATTATTTGCTCAT----TTGAACAATAGACCAGATCCAGAAATCGTGGAAAAGAT 2439
Query 269341 TATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCT 269400
||| | | ||||||| | | |||| ||||| | | || || || || | | | |
Sbjct 2438 TATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCACTGATGCATTACCAGTTAGTTT 2379
Query 269401 TATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCT 269460
| |||||||| | |||| |||| ||||| || | || || | || ||||| |
Sbjct 2378 ATTAGGTATGAACTGTAAATTGATGTGTCAATATGTTGAATTTGTTGCCGACAGATTATT 2319
Query 269461 GGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAGTTTTATGGA 269517
|| | || || || ||| || ||||| ||| ||||||| ||| ||||||||
Sbjct 2318 AGTTGCATTTGG---TAATAAGAAGGTTTATAATGTTCAAAATCCATTTGACTTTATGGA 2262
Query 269518 GAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAA 269577
||||| ||||||| ||||| |||| || || || ||| | || | | ||||| ||
Sbjct 2261 AAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTTTCTGATTATCAAAA 2202
Query 269578 AATGGGTGTAATGTCTA 269594
||||| ||| |||
Sbjct 2201 GGCTGGTGTTATGGCTA 2185
>seq1530
Length=119309
Score = 168 bits (186), Expect = 2e-36
Identities = 199/267 (75%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || | |||| |||||| |||||||| || || || || |||||
Sbjct 25359 ATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 25418
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||||||||||||||| |||||| ||||||||||| | | |||||||| ||
Sbjct 25419 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25478
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| || || || | || || || || | || ||| || ||||
Sbjct 25479 GGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCGGAAGATTCT 25538
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569
|| |||| |||||||||||||| || | || || || || || |||||| | | |
Sbjct 25539 ACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATTGTTAATGTA 25598
Query 104570 G-TAT-TTATTAGAGTAATAATTATTT 104594
| ||| | ||| || ||||||||| ||
Sbjct 25599 GTTATATAATTTGATTAATAATTAATT 25625
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| |||||| |||||||| || || || || |||||
Sbjct 24903 ATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 24962
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| |||||||||||||||| |||||| ||||||||||| | | |||||||| ||
Sbjct 24963 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 25022
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| || || || | || ||||| || | || || || |||
Sbjct 25023 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25082
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||| ||||||||||| | || || || || || |||||
Sbjct 25083 ACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 25132
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| |||||| |||||||| || || || || ||||||
Sbjct 25131 ATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCA 25190
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| |||||||| ||||||| |||||| ||||||||||| | | |||||||| |||
Sbjct 25191 GATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGA 25250
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| || || || | || ||||| || | || || || |||
Sbjct 25251 GGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCA 25310
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || |||||||| || | || || || || || |||||
Sbjct 25311 ACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCAT 25360
>seq1705
Length=31738
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | |||| ||||| |||||||| || || || || |||||||||
Sbjct 13723 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 13664
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| ||||||| ||| || ||||| || |||| || ||||| ||||| ||
Sbjct 13663 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGA 13604
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || || || ||||| | ||| ||||| || | ||| || || ||| ||
Sbjct 13603 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 13544
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|||| ||||||||||||||||| | || || || || || ||||||||
Sbjct 13543 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCATTTT 13494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151370768957084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |