Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1163 203 4e-47 seq731 87.8 2e-12 >seq1163 Length=41016 Score = 203 bits (224), Expect = 4e-47 Identities = 197/251 (78%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATG 7063 || |||| |||||||| || ||||||||||| || | | | || | | ||||| | Sbjct 7834 TAACATAGAATTGACAGAAGACATGACATGGTGGAAGAGCCATCTTTGCAAAATCAGGCG 7893 Query 7064 GATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAA 7123 |||||||||||| ||| | ||| | |||||||| ||||||||| ||||||||| |||| | Sbjct 7894 GATTCCAAGCAGACATAATAATTCTTCTATCATATGGATTTGTCTTTAATTTTTTTATCA 7953 Query 7124 TTATTTGTAATTGATC-TATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTA 7182 |||||||| || ||| || ||||| ||||| ||||| ||||| | |||| | | Sbjct 7954 CGTCGTGTAATTGGTCATAT-CCTTGACCAGTATAATCAGTATCACAATCTTTATACTCA 8012 Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGA 7242 |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| | Sbjct 8013 GCTCCAAAATGTCTCCATTGGAACCCATAAACCGGACCTAAATCACCTTCTCGACGATCA 8072 Query 7243 TTAAATCCTAA 7253 | ||||| || Sbjct 8073 GTTAATCCCAA 8083 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6805 GTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 || ||||| ||||| | || | |||||||||||||||| ||||||||| |||| ||| Sbjct 7578 GTAAATTGCTCTTTCAATGCATCAATATGATCTAAATAAACATGAGCATCACCTAAAGTA 7637 Query 6865 TGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCA 6924 ||||| ||||| || | ||| || || | || ||||| | | || || |||||| Sbjct 7638 TGAATGAATTCTCCACAGTCCATGTCGACGACGTGGGCAATCATCTTGGTCAACAATGCA 7697 Query 6925 TAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGA 6984 |||||||| | ||| || || ||||| || ||||| || ||||||||||| || | Sbjct 7698 TAAGAAGCAATATTGAATGGAACACCCAAGCCCATGTCACAAGATCTTTGATACAATAAA 7757 Query 6985 CAAGATA 6991 || |||| Sbjct 7758 CAGGATA 7764 >seq731 Length=35651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 |||| |||| |||||||||||||| ||| || ||||| || || ||| | | Sbjct 17769 TACCACAAATTGGTGATAAGTTTGCATCTAGACATGGGCAAAAGGGTACTATTGGGGTCA 17828 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 ||| | || |||||||||||||| || | | ||||| ||||| ||| | ||||| | Sbjct 17829 CGTATAGACATGAAGATATGCCTTTCACAGCACAAGGTATTGTGCCAGATTTAATTATCA 17888 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 |||| |||||| ||||| ||| ||||| Sbjct 17889 ACCCCCATGCTATTCCATCTCGTATGAC 17916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595858049146800