Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1530 118 1e-21
seq1705 86.0 6e-12
>seq1530
Length=119309
Score = 118 bits (130), Expect = 1e-21
Identities = 172/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||||||||| ||| || || || ||||||||||||||||| | |
Sbjct 25122 AAAATTTGCATACCACCTCTCAATCTCAAAACTAAATGTAAAGTAGATTCCTTTTGGATG 25181
Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || ||| |||| | ||| || | ||||| || |||| || || | ||
Sbjct 25182 TTGTAGTCAG--ATAATGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTT 25239
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
| |||||||||||||||||||| || || | ||||| | |||||| | | | |||||
Sbjct 25240 GTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGT 25299
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
||| || || || | |||||||| || || || | || || || || || ||||
Sbjct 25300 CAGAAGATTCAACTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTAACGAAAATTTGCA 25359
Query 95007 T 95007
|
Sbjct 25360 T 25360
Score = 109 bits (120), Expect = 5e-19
Identities = 170/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||||||||| || || || || ||||||||||||||||| | |
Sbjct 24894 AAAATTTGCATACCACCTCTCAATCTTAAAACTAAATGTAAAGTAGATTCCTTTTGGATG 24953
Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || ||| ||| |||| | || || | ||||| || |||| || || | ||
Sbjct 24954 TTGTAGTCGG--ATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTT 25011
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
| |||||||| ||||||||||| || || | ||||| | |||||| | | | |||||
Sbjct 25012 GTTGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGT 25071
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
||| || || || | || ||||| || ||||| | || || || || || ||||
Sbjct 25072 CAGAAGATTCAACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCA 25131
Query 95007 T 95007
|
Sbjct 25132 T 25132
Score = 98.7 bits (108), Expect = 9e-16
Identities = 165/239 (69%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || ||||| |||| ||||| || || ||||||||||||||||| | |
Sbjct 25350 AAAATTTGCATACCACCTCTTAATCTTAACACTAAATGTAAAGTAGATTCCTTTTGGATG 25409
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| | ||| | || || | ||||| || |||| || || | |||
Sbjct 25410 TTGTAGTCGGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGT 25469
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||| ||||||||||| || || | ||||| | ||| ||| ||| ||||||
Sbjct 25470 TGATCTGGTGGAATACCTTCCTTATCTTGGATTTTAGACTTAACGTTATCGATAGTGTCG 25529
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || | || || || || || || | ||| || || || || |||||
Sbjct 25530 GAAGATTCTACTTCTAAGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 25588
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| |||| ||| || || || ||||||||||||||||| | ||| || | |
Sbjct 24678 CCACCTCTTAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGT--CAG 24735
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
||| |||| | ||| || | ||||| || | || || || | ||| |||||||| |
Sbjct 24736 ATAATGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 24795
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| |||||||| || || | ||||| | |||||| | | | |||||||| || |
Sbjct 24796 GGATACCTTCCTTATCTTGGATTTTAGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 24855
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | |||||||| || || || | || || || || || |||||
Sbjct 24856 CTTCCAAGGTGATGGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 24904
>seq1705
Length=31738
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| |||| || || ||||| || |||||||||||||| | ||| || ||
Sbjct 13723 CCACCTCTTAATCTTAAGACTAAGTGTAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAT 13664
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| || | || || || | |||||||||||||| || || || |||
Sbjct 13663 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGA 13604
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | || || | ||||| | | | ||||||| || ||
Sbjct 13603 ATACCTTCCTTGTCTTGGATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 13544
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || || || ||||| | || || || || || |||||
Sbjct 13543 TCTAAGGTAATAGTCTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 13497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448280704382280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |