Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06-
03] 1,873 sequences; 16,614,112 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1387 351 1e-91
>seq1387
Length=15432
Score = 351 bits (388), Expect = 1e-91
Identities = 615/889 (69%), Gaps = 19/889 (2%)
Strand=Plus/Plus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||||||| |||||| ||||| ||||| || || || || | ||||| ||| |
Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
|||||||| ||||||||||||| | ||| | | || ||| ||| | | | ||||
Sbjct 2262 TCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACCAAATGCAACTAAT 2321
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
||||| || || |||||||| | |||||||||||| |||| ||| |||||||| | ||
Sbjct 2322 AATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAAA 2381
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424
| || || | || | || ||| | |||||| ||| || ||||||||||| ||
Sbjct 2382 CTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAATC 2441
Query 21425 TTTATTATCCTAGATGTACTAGG---GGGATACAAT--AATTGTTTAAACATCAAACATG 21479
||| ||| ||| | || | || || | || || ||| | ||||| |
Sbjct 2442 TTT----TCCACGATTT-CTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAACAAG 2496
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
|||||||| ||| || |||||||| |||| ||||||||||| || || |||||||| |
Sbjct 2497 CAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTG 2556
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
||||||| ||||| || |||||||| || ||||| ||||||| ||| ||||||||| |
Sbjct 2557 GCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATAC 2616
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA-TTCTTTATCCAATATC 21658
| ||||| ||||||||||||||||||| |||| | ||| ||| ||| |||| |||
Sbjct 2617 CTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATAT-AAGACTTCAGTATCAGTGATC 2675
Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTT-TAATACAATCAAT-TGTATCAATAGCTTTTA 21716
||| || |||||| | | |||||||| | |||||| ||| ||| |||||||| || |
Sbjct 2676 CATCTTAATGCCCAATCAG-CTTTTCTTCTGATACAAGGAATATGT-TCAATAGCATTAA 2733
Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776
| | | || ||| | | ||| | || ||| |||
Sbjct 2734 ATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTT 2793
Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836
||||||| |||||||| ||| || ||||| || || || || | || |||| | ||
Sbjct 2794 CAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTT 2853
Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896
|||| || | |||| || | || |||||||| || || |||||| || ||||
Sbjct 2854 GAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAA 2913
Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT---TTTCCAAT 21953
| ||||| || | || || ||||||| ||| | ||| | ||||| | ||||||
Sbjct 2914 AGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAAT 2973
Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013
| |||||| || |||||| | |||||||| |||||||| || || || |
Sbjct 2974 CATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCT 3033
Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062
| || | ||| || |||| |||| | |||||||| || ||||| ||
Sbjct 3034 TGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCT 3082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531888346872520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |