Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1387 351 1e-91 >seq1387 Length=15432 Score = 351 bits (388), Expect = 1e-91 Identities = 615/889 (69%), Gaps = 19/889 (2%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||||||| |||||| ||||| ||||| || || || || | ||||| ||| | Sbjct 2202 TTTTGATAATCAGAAACTCTCTTTTCAAAAAAGTTAGTTTTACCAGCTAATGAAATATTT 2261 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||||||| ||||||||||||| | ||| | | || ||| ||| | | | |||| Sbjct 2262 TCCATAAAGTCAAATGGATTTTGAACATTATAAACCTTCTTATTACCAAATGCAACTAAT 2321 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 ||||| || || |||||||| | |||||||||||| |||| ||| |||||||| | || Sbjct 2322 AATCTGTCGGCAACAAATTCAACATATTGACACATCAATTTACAGTTCATACCTAATAAA 2381 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | || || | || | || ||| | |||||| ||| || ||||||||||| || Sbjct 2382 CTAACTGGTAATGCATCAGTGAAATATTCTTTTTCAATATCAACAGCTTCAACAATAATC 2441 Query 21425 TTTATTATCCTAGATGTACTAGG---GGGATACAAT--AATTGTTTAAACATCAAACATG 21479 ||| ||| ||| | || | || || | || || ||| | ||||| | Sbjct 2442 TTT----TCCACGATTT-CTGGATCTGGTCTATTGTTCAAATGAGCAAATAATAAACAAG 2496 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||||||| ||| || |||||||| |||| ||||||||||| || || |||||||| | Sbjct 2497 CAAAATCAGTATGTAACCCTTCATCTCTACAAATTAATTCATTTGAGAAAGTTAAACCTG 2556 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 ||||||| ||||| || |||||||| || ||||| ||||||| ||| ||||||||| | Sbjct 2557 GCATTAACCCTCTTTTCTTTAACCAGAAAATTGAGGCAAATGATCCACTAAAGAAAATAC 2616 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA-TTCTTTATCCAATATC 21658 | ||||| ||||||||||||||||||| |||| | ||| ||| ||| |||| ||| Sbjct 2617 CTTCAACAGCAGCAAATGCAACTAATCTTTCAGCATAT-AAGACTTCAGTATCAGTGATC 2675 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTT-TAATACAATCAAT-TGTATCAATAGCTTTTA 21716 ||| || |||||| | | |||||||| | |||||| ||| ||| |||||||| || | Sbjct 2676 CATCTTAATGCCCAATCAG-CTTTTCTTCTGATACAAGGAATATGT-TCAATAGCATTAA 2733 Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 | | | || ||| | | ||| | || ||| ||| Sbjct 2734 ATAAGTAATCAGCTTCCTTTGGATCTTTAATATAAGTATCAATTAAAAGGGAATAAGTTT 2793 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 ||||||| |||||||| ||| || ||||| || || || || | || |||| | || Sbjct 2794 CAGAATGAATATTTTCAATCATAATTTGAAACCCATAGAATGATTTAGCTTCTGGAATTT 2853 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||| || | |||| || | || |||||||| || || |||||| || |||| Sbjct 2854 GAACTTCTGCTGAAAAATTTTCAATTAAATTTTCATTAACAATACCATCAGATGCAGCAA 2913 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT---TTTCCAAT 21953 | ||||| || | || || ||||||| ||| | ||| | ||||| | |||||| Sbjct 2914 AGAATGCTAAGACTCTTGAAATGAAATATCTTTCATCATCATTCAATTTATCTCTCCAAT 2973 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 | |||||| || |||||| | |||||||| |||||||| || || || | Sbjct 2974 CATGTAAATCCTTACTTAAATCAATTTCTTCAGCAGTCCAAAATGATGCTTCTGCTTTCT 3033 Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 | || | ||| || |||| |||| | |||||||| || ||||| || Sbjct 3034 TGTAAAATTGCCAAATTTCATGATATCTAATTGGAAACATAACAAATCT 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888346872520