Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spathaspora_20hagerdaliae_20[genbank_20GCA_5F001655755.1_202016-06- 03] 1,873 sequences; 16,614,112 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1387 208 2e-48 seq1308 145 2e-29 seq1498 102 2e-16 >seq1387 Length=15432 Score = 208 bits (230), Expect = 2e-48 Identities = 538/807 (67%), Gaps = 32/807 (4%) Strand=Plus/Minus Query 22217 TAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCAT 22276 |||||||||||||| | | || ||||| ||| ||| ||| || | |||||| || Sbjct 2922 TAGCATTCTTTGCTGCATCTGATGGTATTGTTAATGAAAATTTAATTGAAAATTTTTCAG 2863 Query 22277 CTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATG 22336 | ||| ||||| ||||| || | || |||||||| | ||||| |||||||||||| Sbjct 2862 CAGAAGTTCAAATTCCAGAAGCTAAATCATTCTATGGGTTTCAAATTATGATTGAAAATA 2803 Query 22337 TTCACGCGGAAACATATTC---TATGAT-GCTACAGTCACTCGTAGAAGATAAAGACGAA 22392 |||| | ||||| ||||| | | || | ||| | | | || ||||| | | ||| Sbjct 2802 TTCATTCTGAAACTTATTCCCTTTTAATTGATAC--TTA-TATTA-AAGATCCAAAGGAA 2747 Query 22393 CAACGAAACTTATTCCGCGCGATTCGCACC-ATTCAATCAATTAAGAATAAGGCAGATTG 22451 ||||||| || ||| | || |||| | || | | || || ||||| Sbjct 2746 GCTGATTACTTATTTAATGCTATT-GAACATATTCCTTGTATCAGAAGAAAAGCTGATTG 2688 Query 22452 GGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGC 22508 ||| | | |||||| | | | |||| | || || ||| | | |||||||||| Sbjct 2687 GGCATTAAGATGGATCACTGATACTGAAGTCTTATATGCTGAAAGATTAGTTGCATTTGC 2628 Query 22509 TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCG 22568 || |||||||| ||||||||| |||| ||||| |||| || ||| |||| ||| | Sbjct 2627 TGCTGTTGAAGGTATTTTCTTTAGTGGATCATTTGCCTCAATTTTCTGGTTAAAGAAAAG 2568 Query 22569 TGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCA 22628 | | ||||| ||| |||| || |||||||| |||||| | ||||||| || | || Sbjct 2567 AGGGTTAATGCCAGGTTTAACTTTCTCAAATGAATTAATTTGTAGAGATGAAGGGTTACA 2508 Query 22629 TACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAAC---TTCCATATGA 22685 ||| |||||||| ||| | ||| | |||| | | ||| || |||| || Sbjct 2507 TACTGATTTTGCTTGTTTATTATTT---GCTCATTTGAACAATAGACCAGATCCA---GA 2454 Query 22686 AACTGTACTTGATATTATTACAAATGCAGTTGAACTTG--AACGTCTATTTATTTGCGAG 22743 || || | |||||| | || ||||| ||| || | ||||| | || Sbjct 2453 AATCGTGGAAAAGATTATTGTTGAAGCTGTTGATATTGAAAAAGAATATTTCACT--GAT 2396 Query 22744 GCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTT 22803 || |||||||| ||| | | ||||| || ||| ||| || |||| || ||||| Sbjct 2395 GCATTACCAGTTAGTTTATTAGGTATGAACTGTAAATTGATGTGTCAATATGTTGAATTT 2336 Query 22804 GTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCA 22863 ||||| || | ||||| || || | ||| || ||| |||||| || |||||| Sbjct 2335 GTTGCCGACAGATTATTAGTTGCATTTGGTAATAAGAAGGTTTATAATGTTCAAAATCCA 2276 Query 22864 TTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTT 22923 ||||| | |||||| ||||||| | | || || || || || || ||||| |||||| Sbjct 2275 TTTGACTTTATGGAAAATATTTCATTAGCTGGTAAAACTAACTTTTTTGAAAAGAGAGTT 2216 Query 22924 GGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGA------TAGTTCAAAACAC 22977 ||| || ||||| || |||||||||| | | ||||| |||||| || || Sbjct 2215 TCTGATTATCAAAAGGCTGGTGTTATGGCTAAACACAATGAACCAACTAGTTCTAACCAT 2156 Query 22978 GGATTTACATTAGATGAAGAATTTTAA 23004 | ||| | || |||||||| || ||| Sbjct 2155 GACTTTTCCTTTGATGAAGATTTCTAA 2129 >seq1308 Length=6085 Score = 145 bits (160), Expect = 2e-29 Identities = 946/1504 (63%), Gaps = 58/1504 (4%) Strand=Plus/Minus Query 363091 GGTCTATATGATGGTGTTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACT 363150 ||| | ||| ||||||| || || ||| | |||| || | || | |||||||| || Sbjct 5515 GGTGTTTATCATGGTGTAACCACGGTTGAATTAGATAACTTAGCTGCCGAAACTGCTGCT 5456 Query 363151 TATCTGACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCT 363210 ||| |||||| | ||||||||||| ||| | |||||| | ||||| || || | Sbjct 5455 TATATGACCACTATTCATCCTGATTATGCCATTTTAGCTGCTAGAATTGCTGTATCTAAT 5396 Query 363211 CTTCATAAAATGAC-ATCAAATAAGTTT-TCCAGT--GTCATGGATAGTCTGTATAACTA 363266 | |||||| || | |||| || || || ||| || | | || | ||| | || Sbjct 5395 TTACATAAACAAACTACCAAACAATATTCTCAAGTTAGTAAAGAAT----TATATGATTA 5340 Query 363267 TGTCAATACAAAGACCGGTAAGTGGTCACCACTCATTGCCGATGACATTATTGAATGTAT 363326 ||| || | ||||||| ||| || || | ||| || | || | | ||| ||| Sbjct 5339 TGTTAACCCCAAGACCGATAAACATTCTCCTATGATTTCCAAGGAGACTTATGATATTAT 5280 Query 363327 CCGTTCTAATGCGGAAGTTTTCGATGACGTTATCAATTATGAGAAGGATCTCGAGTATGA 363386 || |||| || | || || | ||| ||| || ||| || | ||| | Sbjct 5279 TTGTGAACATGCCGATGAATTAAATTCAGCTATTGTTTACGATCGTGATTTCAATTATAA 5220 Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 | ||| |||| ||| || | || | ||| || ||| | | |||||| | ||| Sbjct 5219 TTATTTTGGATTTAAAACTTTAGAAAGATCTTATTTATTAAGAGTTAATGGTAAAGTTGC 5160 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||| | || || ||| | | ||| | || || |||||||| ||| | |||| | Sbjct 5159 TGAAAGACCACAACATTTAATCATGAGAGTGGCAATTGGTATTCATGGTAGGGAT----A 5104 Query 363507 TGCCGCGA----TTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCC 363558 | || ||| ||||| | ||||| | | || | | || | ||||| || | Sbjct 5103 TCCCTCGAGTTATTGAATCTTATAATATGAT--GT-CACAAAAGTTT-TTCACTCATGGT 5048 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTC-T 363617 | ||||| | | ||||| || || | | |||||| ||||| || || |||||| | Sbjct 5047 TCACCAACTTTATTTAATGCCGGTACCCCAAGTCCACAAATGTCGTCATG-TTTCTTAGT 4989 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 ||||| || ||||| || || || || | ||| || | || | ||||| | || Sbjct 4988 TGCCATGAAAGATGATTCAATTGATGGGATTTATGATACTTTGAAAACATGTGCATTGAT 4929 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| |||| ||| || || |||||| || || || ||| ||||| | || | || Sbjct 4928 TTCAAAGAGTGCTGGTGGTATTGGTTTACATATTCATAATATTCGTTCTACTGGGGC-TT 4870 Query 363737 ACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 | ||| || || || |||| | || || | | |||||| | ||||| || || Sbjct 4869 ATATTGCTGGTACTAATGG-TACTTCCAACGGTATTATCCCCATGGTACGTGTTTTCAAC 4811 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 || || || | || ||||| || ||||| ||| | ||| || ||||| | ||| Sbjct 4810 AACACCGCACGTTATGTCGATCAAGGTGGTAATAAGAGACCAGGTGCTTTTGCCCTCTAT 4751 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915 | || || ||| | ||||||||||| ||| |||| | | ||||| || ||| Sbjct 4750 TTAGAACCATGGCATTCAGATATTTTTGATTTTATTGATATTAGAAAAAATCAAGGTAAA 4691 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 || ||| | | || | ||| | ||| ||| | ||| || |||| ||||||||| Sbjct 4690 GAAGAAATTAGAGCCAGAGATTTATTCCCAGCATTATGGATTCCTGATTTATTTATGAAG 4631 Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || ||||| | | ||||| || | |||| ||| | ||| ||| || | | Sbjct 4630 CGTGTGGAACAAAATGGTGATTGGACATTATTTTCCCCTAATGAAGCTCCTGGATTACCT 4571 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 ||||| | ||||| || | || |||| ||||| |||||| || || | | Sbjct 4570 GATGTTTATGGTGAAGAATTTGAACAATTATATGAAAAATATGAACGTGAAGGTCGTGGT 4511 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 | | || ||| ||||| || |||||| | |||| | || | || | ||| || Sbjct 4510 AGACAAACTATTAAGGCACAAAAATTATGGTATTCCATTTTAGAAGCCCAAACTGAAACT 4451 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || || | |||||| || |||||| | || || ||| |||| || || | | Sbjct 4450 GGTACTCCATTTATGTTATATAAAGATGCTTGTAATGAAAAGACCAATCAAAAGAATTTA 4391 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 |||| ||| | ||| ||||| || ||| ||||||| | | || || || Sbjct 4390 GGTATTATTAAATCATCTAACTTATGTTGTGAAATTGTTGAATATTCATCACCTGAAGAA 4331 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---AAAAGATG----- 364327 ||| || ||||| | || || ||||| | || |||||||| |||||||| Sbjct 4330 GTTGCTGTCTGTAATTTAGCTTCAATCGCCTTACCAGCGTTTGTTGAAAAAGATGATGAT 4271 Query 364328 ----------GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC 364377 || |||||| | || | |||| | ||| | || |||| | Sbjct 4270 CATTCATGGTATAATTTTGATAA-----AT-TACATGAAATTACCAAGATTGTTACTCGT 4217 Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAAT 364437 ||| | | || ||||| || ||||||||||| |||| |||||| | ||| ||| Sbjct 4216 AATTTAAATAAAGTTATTGATCGTAATTATTATCCTGTTCCAGAAGCCAAAAATTCAAAT 4157 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGC-T 364496 ||| || | || |||| | | || || || || | ||||| | ||| ||| || | Sbjct 4156 ATGAAAAATAGACCAATTGCTTTGGGGGTCCAAGGTTTGGCTGATGCTTTCATG--GCTT 4099 Query 364497 CAAGA-TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 |||| | |||||||||| | || || | | |||||| | || |||||||| | Sbjct 4098 TAAGATTACCATTTGATTCTCAAGAAGCCAGAGAATTAAATATTCAAATTTTTGAAACCA 4039 Query 364556 TGTA 364559 | || Sbjct 4038 TTTA 4035 >seq1498 Length=40732 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 145524 AATTGAATTAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACT 145583 |||||| | |||||||| || |||||||||||| ||||| ||| ||| ||| || Sbjct 28393 AATTGAGT-AAATCTTCGTCGCTAAATCCAGTTCCAATCTTACATGTCGTTTCAAACTCT 28451 Query 145584 TCTTCGTCTGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCG 145643 || ||| ||| |||| || | |||| || |||||||| ||| || | ||| || Sbjct 28452 CCTGTATCTTGATTATACGATGCTAAAAGGAATCCACCATATGTACCTGTCCTTTTCCCC 28511 Query 145644 CGACCGGTATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAA 145703 ||| |||| || | || || | ||| | |||||| | ||| || | |||| Sbjct 28512 TTACCATTATATGCCCCTATAACAACCAAGTCAAGAGAATCACCTACTCCTGCCAAATAA 28571 Query 145704 TCCTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 |||||||| | ||| |||||||| | || | ||| |||||||||||| Sbjct 28572 TCCTTTTTCAATTTAAGCCAATTACGTGACCTTTTAGATGGTTCATAG 28619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303322322364686